IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3742	 41.24	-1	4574362..4574892	-	176	157963572	-	Spea_3760	-	methylation site containing protein
3743	 42.27	0	4574913..4575449	-	178	157963573	-	Spea_3761	-	MSHA pilin protein MshA
3744	 45.48	0	4575587..4576195	-	202	157963574	-	Spea_3762	-	methylation site containing protein
3745	 46.14	0	4576275..4576766	-	163	157963575	-	Spea_3763	-	hypothetical protein
3746	 47.58	0	4576785..4578005	-	406	157963576	-	Spea_3764	-	type II secretion system protein
3747	 48.56	+1	4578008..4579741	-	577	157963577	-	Spea_3765	-	type II secretion system protein E
3748	 47.16	0	4579741..4581027	-	428	157963578	-	Spea_3766	-	TPR repeat-containing protein
3749	 47.85	0	4581024..4581932	-	302	157963579	-	Spea_3767	-	MSHA biogenesis protein MshM
3750	 47.46	0	4581935..4583605	-	556	157963580	-	Spea_3768	-	pilus (MSHA type) biogenesis protein MshL
3751	 40.71	-1	4583607..4583945	-	112	157963581	-	Spea_3769	-	hypothetical protein
3752	 41.86	-1	4583926..4584582	-	218	15796358