IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3686	 49.02	+1	4509266..4512172	+	968	157963516	-	Spea_3704	-	ATP-dependent helicase HepA
3687	 49.63	+1	4512299..4513237	+	312	157963517	-	Spea_3705	-	hypothetical protein
3688	 41.60	-1	4513295..4513693	+	132	157963518	-	Spea_3706	-	transposase
3689	 39.71	-1	4513777..4514529	+	250	157963519	-	Spea_3707	-	integrase catalytic region
3690	 39.22	-1	4514577..4515137	-	186	157963520	-	Spea_3708	-	hypothetical protein
3691	 45.23	0	4515241..4516047	-	268	157963521	-	Spea_3709	-	enoyl-CoA hydratase
3692	 47.79	0	4516323..4517318	+	331	157963522	-	Spea_3710	-	CheC, inhibitor of MCP methylation
3693	 46.11	0	4517320..4518282	+	320	157963523	-	Spea_3711	-	diguanylate cyclase
3694	 43.48	0	4518384..4518797	-	137	157963524	-	Spea_3712	-	hypothetical protein
3695	 44.99	0	4518827..4519555	-	242	157963525	-	Spea_3713	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3696	 50.25	+1	4519808..4520599	-	263	157963526	-	Spea_3714	-	ABC-3 protein
3697	 50.65	+1	4520