IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
323	 49.32	+1	363153..363521	-	122	157960153	-	Spea_0324	-	tetraheme cytochrome c, putative
324	 49.48	+1	363521..365044	-	507	157960154	-	Spea_0325	-	flavocytochrome c
325	 47.10	0	365389..366180	+	263	157960155	-	Spea_0326	-	TetR family transcriptional regulator
326	 48.44	0	366353..367444	+	363	157960156	-	Spea_0327	-	branched-chain amino acid aminotransferase
327	 46.12	0	367542..367940	-	132	157960157	-	Spea_0328	-	hypothetical protein
328	 46.27	0	368228..369178	-	316	157960158	-	Spea_0329	-	phospholipid/glycerol acyltransferase
329	 44.26	0	369186..370091	-	301	157960159	-	Spea_0330	-	phospholipid/glycerol acyltransferase
330	 42.42	0	370305..371834	-	509	157960160	-	Spea_0331	-	EAL domain-containing protein
331	 52.07	+2	372147..373667	-	506	157960161	-	Spea_0332	-	Mg chelatase, subunit ChlI
332	 37.53	-2	374320..376035	+	571	157960162	-	Spea_0333	-	KAP P-loop domain-containing protein
333	 45.27	0	376866..378122	-	418	157960163	-	Spea_0334	-	histidin