IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3554	 47.42	0	4356098..4357084	-	328	157963384	-	Spea_3570	-	tRNA-dihydrouridine synthase A
3555	 40.90	-1	4357309..4358259	-	316	157963385	-	Spea_3571	-	LysR family transcriptional regulator
3556	 39.67	-1	4358243..4359220	-	325	157963386	-	Spea_3572	-	LysR family transcriptional regulator
3557	 46.82	0	4359631..4361781	+	716	157963387	-	Spea_3573	-	decaheme cytochrome c
3558	 45.26	0	4362382..4364142	-	586	157963388	-	Spea_3574	-	flavocytochrome c
3559	 44.48	0	4364337..4366013	-	558	157963389	-	Spea_3575	-	phenylalanine/histidine ammonia-lyase
3560	 42.51	0	4366442..4367662	-	406	157963390	-	Spea_3576	-	histidine kinase A domain-containing protein
3561	 46.22	0	4367649..4368323	-	224	157963391	-	Spea_3577	-	two component transcriptional regulator
3562	 40.23	-1	4368327..4369094	-	255	157963392	-	Spea_3578	-	LuxR family transcriptional regulator
3563	 47.35	0	4369592..4370854	-	420	157963393	-	Spea_3579	-	hypothetical protein
3564	 48.00	0	4370968..4372044	-	358