IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
308	 44.44	0	348231..348527	+	98	157960138	-	Spea_0309	-	hypothetical protein
309	 48.59	+1	348616..349644	+	342	157960139	-	Spea_0310	-	serine/threonine protein kinase
310	 45.26	0	349770..350381	+	203	157960140	-	Spea_0311	-	DSBA oxidoreductase
311	 39.91	-1	350570..350782	+	70	157960141	-	Spea_0312	-	hypothetical protein
312	 41.67	-1	350796..350999	-	67	157960142	-	Spea_0313	-	hypothetical protein
313	 48.31	0	351180..352661	+	493	157960143	-	Spea_0314	-	Na+/H+ antiporter NhaC
314	 45.41	0	352769..353389	-	206	157960144	-	Spea_0315	-	hypothetical protein
315	 47.69	0	353631..354974	+	447	157960145	-	Spea_0316	-	phospholipase
316	 47.71	0	355250..356146	+	298	157960146	-	Spea_0317	-	hypothetical protein
317	 50.05	+1	356147..357073	+	308	157960147	-	Spea_0318	-	alpha/beta hydrolase fold
318	 49.16	+1	357070..358371	+	433	157960148	-	Spea_0319	-	hypothetical protein
319	 47.32	0	358368..359618	+	416	157960149	-	Spea_0320	-	hypothetical protein
320	 46.37	0	359683..360426	-	247	157960150	-	Spea_0321	-	cupin 2 domain-containing protein
321	 49.59	+1	360604..361692	-	362	157960151	-	Spea_0322	-	hypothetical protein
322	 46.84	0	361966..363105	-	379	157960152	-	Spea_0323	-	hypothetical protein
323	 49.32	+1	363153..363521	-	122	157960153	-	Spea_0324	-	tetraheme cytochrome c, putative
324	 49.48	+1	363521..365044	-	507	157960154	-	Spea_0325	-	flavocytochrome c
325	 47.10	0	365389..366180	+	263	157960155	-	Spea_0326	-	TetR family transcriptional regulator
326	 48.44	0	366353..367444	+	363	157960156	-	Spea_0327	-	branched-chain amino acid aminotransferase
327	 46.12	0	367542..367940	-	132	157960157	-	Spea_0328	-	hypothetical protein
328	 46.27	0	368228..369178	-	316	157960158	-	Spea_0329	-	phospholipid/glycerol acyltransferase
329	 44.26	0	369186..370091	-	301	157960159	-	Spea_0330	-	phospholipid/glycerol acyltransferase
330	 42.42	0	370305..371834	-	509	157960160	-	Spea_0331	-	EAL domain-containing protein
331	 52.07	+2	372147..373667	-	506	157960161	-	Spea_0332	-	Mg chelatase, subunit ChlI
332	 37.53	-2	374320..376035	+	571	157960162	-	Spea_0333	-	KAP P-loop domain-containing protein
333	 45.27	0	376866..378122	-	418	157960163	-	Spea_0334	-	histidine kinase
334	 48.88	+1	378094..378762	-	222	157960164	-	Spea_0335	-	two component transcriptional regulator
335	 44.53	0	378856..380070	+	404	157960165	-	Spea_0336	-	hypothetical protein
336	 46.72	0	380368..381921	+	517	157960166	-	Spea_0337	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
337	 46.22	0	382112..383764	-	550	157960167	-	Spea_0338	-	phenylalanine/histidine ammonia-lyase
338	 46.72	0	383792..384142	-	116	157960168	-	Spea_0339	-	cytochrome c
339	 47.77	0	384142..385644	-	500	157960169	-	Spea_0340	-	flavocytochrome c
340	 38.16	-2	385905..386753	+	282	157960170	-	Spea_0341	-	LysR family transcriptional regulator
341	 47.02	0	387020..388027	+	335	157960171	-	Spea_0342	-	LysR family transcriptional regulator
342	 51.20	+1	388225..389097	-	290	157960172	-	Spea_0343	-	DNA-binding transcriptional regulator IlvY
343	 48.72	+1	389278..390759	+	493	157960173	-	Spea_0344	-	ketol-acid reductoisomerase
344	 51.11	+1	391294..393003	+	569	157960174	-	Spea_0345	-	acetolactate synthase 2 catalytic subunit
345	 44.57	0	393081..393347	+	88	157960175	-	Spea_0346	-	amino acid-binding ACT domain-containing protein
346	 49.46	+1	393352..394281	+	309	157960176	-	Spea_0347	-	branched-chain amino acid aminotransferase
347	 51.89	+2	394506..396353	+	615	157960177	-	Spea_0348	-	dihydroxy-acid dehydratase
348	 49.97	+1	396382..397932	+	516	157960178	-	Spea_0349	-	threonine dehydratase
349	 50.84	+1	398269..399405	+	378	157960179	-	Spea_0350	-	Serine--pyruvate transaminase
350	 51.16	+1	399637..401622	-	661	157960180	-	Spea_0351	-	TonB-dependent copper receptor
351	 48.15	0	401814..403190	-	458	157960181	-	Spea_0352	-	sodium:neurotransmitter symporter
352	 47.03	0	403619..404107	-	162	157960182	-	Spea_0353	-	AsnC family transcriptional regulator
353	 49.54	+1	404214..404966	-	250	157960183	-	Spea_0354	-	phosphoesterase PA-phosphatase related
354	 44.52	0	405421..406278	+	285	157960184	-	Spea_0355	-	hypothetical protein
355	 43.14	0	406354..406608	-	84	157960185	-	Spea_0356	-	hypothetical protein
356	 47.82	0	406800..409892	-	1030	157960186	-	Spea_0357	-	acriflavin resistance protein
357	 45.84	0	409908..411026	-	372	157960187	-	Spea_0358	-	RND family efflux transporter MFP subunit
358	 44.12	0	411042..411653	-	203	157960188	-	Spea_0359	-	TetR family transcriptional regulator
359	 46.97	0	411859..413874	+	671	157960189	-	Spea_0360	-	ATP-dependent DNA helicase Rep
360	 42.75	0	413908..416529	-	873	157960190	-	Spea_0361	-	diguanylate cyclase/phosphodiesterase with GAF sensor
361	 45.10	0	417531..419450	-	639	157960191	-	Spea_0362	-	diguanylate cyclase/phosphodiesterase
362	 40.25	-1	419458..420165	-	235	157960192	-	Spea_0363	-	hypothetical protein
363	 44.88	0	420184..420789	-	201	157960193	-	Spea_0364	-	OmpA/MotB domain-containing protein
364	 47.62	0	420786..422213	-	475	157960194	-	Spea_0365	-	TolC family type I secretion outer membrane protein
365	 46.20	0	422248..423630	-	460	157960195	-	Spea_0366	-	HlyD family type I secretion membrane fusion protein
366	 47.98	0	423627..425804	-	725	157960196	-	Spea_0367	-	ABC transporter related
367	 45.87	0	425898..442232	-	5444	157960197	-	Spea_0368	-	cadherin
368	 46.13	0	442471..448674	-	2067	157960198	-	Spea_0369	-	putative outer membrane adhesin like proteiin
369	 45.04	0	448956..450125	-	389	157960199	-	Spea_0370	-	HemY domain-containing protein
370	 45.64	0	450125..451318	-	397	157960200	-	Spea_0371	-	protein of unknown function DUF513 hemX
371	 46.58	0	451380..452111	-	243	157960201	-	Spea_0372	-	uroporphyrinogen III synthase HEM4
372	 48.34	0	452118..453050	-	310	157960202	-	Spea_0373	-	porphobilinogen deaminase
373	 46.66	0	453249..455672	+	807	157960203	-	Spea_0374	-	adenylate cyclase
374	 39.09	-1	455758..456087	-	109	157960204	-	Spea_0375	-	frataxin family protein
375	 45.27	0	456462..456662	+	66	157960205	-	Spea_0376	-	hypothetical protein
376	 49.64	+1	456668..457912	+	414	157960206	-	Spea_0377	-	diaminopimelate decarboxylase
377	 49.82	+1	457970..458806	+	278	157960207	-	Spea_0378	-	diaminopimelate epimerase
378	 46.29	0	458803..459435	+	210	157960208	-	Spea_0379	-	hypothetical protein
379	 48.09	0	459448..460362	+	304	157960209	-	Spea_0380	-	tyrosine recombinase XerC
380	 45.33	0	460359..461075	+	238	157960210	-	Spea_0381	-	HAD family hydrolase
381	 41.08	-1	461183..461647	+	154	157960211	-	Spea_0382	-	Egg lysin (Sperm-lysin)
382	 46.47	0	461706..462428	-	240	157960212	-	Spea_0383	-	hypothetical protein
383	 45.41	0	462769..463182	+	137	157960213	-	Spea_0384	-	hypothetical protein
384	 48.63	+1	463306..464730	+	474	157960214	-	Spea_0385	-	outer membrane efflux protein
385	 49.88	+1	464727..465953	+	408	157960215	-	Spea_0386	-	hypothetical protein
386	 48.83	+1	465965..469120	+	1051	157960216	-	Spea_0387	-	CzcA family heavy metal efflux protein
387	 48.08	0	469272..470804	-	510	157960217	-	Spea_0388	-	leucyl aminopeptidase
388	 44.77	0	471188..471493	-	101	157960218	-	Spea_0389	-	Fis family transcriptional regulator
389	 46.85	0	471511..472479	-	322	157960219	-	Spea_0390	-	nifR3 family TIM-barrel protein
390	 47.17	0	472631..473512	-	293	157960220	-	Spea_0391	-	ribosomal protein L11 methyltransferase
391	 45.39	0	473880..474584	+	234	157960221	-	Spea_0392	-	fumarate reductase cytochrome b-556 subunit
392	 47.41	0	474746..475420	+	224	157960222	-	Spea_0393	-	fumarate reductase respiratory complex transmembrane subunit
393	 48.93	+1	475477..477477	+	666	157960223	-	Spea_0394	-	fumarate reductase flavoprotein subunit
394	 46.91	0	477474..478217	+	247	157960224	-	Spea_0395	-	fumarate reductase iron-sulfur subunit
395	 48.63	+1	478350..479264	+	304	157960225	-	Spea_0396	-	LysR family transcriptional regulator
396	 43.84	0	479324..480589	-	421	157960226	-	Spea_0397	-	transcription termination factor Rho
397	 43.43	0	480827..481153	-	108	157960227	-	Spea_0398	-	thioredoxin
398	 44.70	0	481557..482867	+	436	157960228	-	Spea_0399	-	ATP-dependent RNA helicase RhlB
399	 43.42	0	482881..483792	+	303	157960229	-	Spea_0400	-	Ppx/GppA phosphatase
400	 42.32	0	484439..487420	+	993	157960230	-	Spea_0401	-	TonB-dependent receptor
401	 41.60	-1	487518..487916	+	132	157960231	-	Spea_0402	-	transposase
402	 39.71	-1	488000..488752	+	250	157960232	-	Spea_0403	-	integrase catalytic region
403	 43.11	0	489235..491925	+	896	157960233	-	Spea_0404	-	TonB-dependent receptor
404	 39.14	-1	492003..492536	-	177	157960234	-	Spea_0405	-	hypothetical protein
405	 42.08	0	499518..500534	-	338	157960235	-	Spea_0406	-	transposase IS116/IS110/IS902 family protein
406	 42.31	0	500954..501343	-	129	157960236	-	Spea_0407	-	mutator MutT protein
407	 41.25	-1	501340..501579	-	79	157960237	-	Spea_0408	-	hypothetical protein
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.