IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3150	 40.98	-1	3873495..3873821	-	108	157962980	-	Spea_3163	-	hypothetical protein
3151	 46.11	0	3874215..3876788	-	857	157962981	-	Spea_3164	-	ATPase
3152	 45.38	0	3877014..3877760	-	248	157962982	-	Spea_3165	-	hypothetical protein
3153	 45.58	0	3877760..3878731	-	323	157962983	-	Spea_3166	-	RluA family pseudouridine synthase
3154	 40.52	-1	3878809..3879615	+	268	157962984	-	Spea_3167	-	putative lipoprotein
3155	 44.29	0	3879732..3881903	-	723	157962985	-	Spea_3168	-	exporter of the RND superfamily protein-like protein
3156	 46.86	0	3882417..3884279	-	620	157962986	-	Spea_3169	-	methyl-accepting chemotaxis sensory transducer
3157	 48.52	+1	3884520..3885467	+	315	157962987	-	Spea_3170	-	ornithine cyclodeaminase
3158	 49.82	+1	3885702..3886247	+	181	157962988	-	Spea_3171	-	ECF subfamily RNA polymerase sigma-24 factor
3159	 44.57	0	3886240..3886782	+	180	157962989	-	Spea_3172	-	hypothetical protein
3160	 44.69	0	3886779..3887720	+	313	157962990	-	Spe