IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3049	 45.53	0	3755843..3757342	-	499	157962879	-	Spea_3061	-	transcription elongation factor NusA
3050	 42.98	0	3757370..3757825	-	151	157962880	-	Spea_3062	-	hypothetical protein
3051	 42.86	0	3758364..3758699	-	111	157962881	-	Spea_3063	-	preprotein translocase subunit SecG
3052	 44.57	0	3758701..3759483	-	260	157962882	-	Spea_3064	-	Triose-phosphate isomerase
3053	 48.13	0	3759680..3761017	-	445	157962883	-	Spea_3065	-	phosphoglucosamine mutase
3054	 45.20	0	3761117..3761959	-	280	157962884	-	Spea_3066	-	dihydropteroate synthase
3055	 46.54	0	3762018..3763970	-	650	157962885	-	Spea_3067	-	ATP-dependent metalloprotease FtsH
3056	 47.30	0	3764031..3764660	-	209	157962886	-	Spea_3068	-	23S rRNA methyltransferase J
3057	 41.33	-1	3764754..3765053	+	99	157962887	-	Spea_3069	-	hypothetical protein
3058	 44.66	0	3765146..3766054	-	302	157962888	-	Spea_3070	-	protein-export membrane protein SecF
3059	 47.44	0	3766056..3767870	-	604	157962889	-	Spea_3071