IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3042	 44.52	0	3745676..3746569	-	297	157962872	-	Spea_3054	-	lipoprotein NlpI
3043	 44.87	0	3746741..3748855	-	704	157962873	-	Spea_3055	-	polynucleotide phosphorylase/polyadenylase
3044	 44.71	0	3749052..3751091	+	679	157962874	-	Spea_3056	-	diguanylate cyclase/phosphodiesterase
3045	 42.96	0	3751292..3751561	-	89	157962875	-	Spea_3057	-	30S ribosomal protein S15
3046	 44.73	0	3751683..3752630	-	315	157962876	-	Spea_3058	-	tRNA pseudouridine synthase B
3047	 44.76	0	3752630..3753058	-	142	157962877	-	Spea_3059	-	ribosome-binding factor A
3048	 46.15	0	3753125..3755815	-	896	157962878	-	Spea_3060	-	translation initiation factor IF-2
3049	 45.53	0	3755843..3757342	-	499	157962879	-	Spea_3061	-	transcription elongation factor NusA
3050	 42.98	0	3757370..3757825	-	151	157962880	-	Spea_3062	-	hypothetical protein
3051	 42.86	0	3758364..3758699	-	111	157962881	-	Spea_3063	-	preprotein translocase subunit SecG
3052	 44.57	0	3758701..3759483	-	260	157962882</