IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3001	 45.56	0	3693835..3694554	-	239	157962831	-	Spea_3013	-	hypothetical protein
3002	 47.10	0	3694964..3696343	-	459	157962832	-	Spea_3014	-	amidohydrolase
3003	 44.91	0	3696561..3697571	-	336	157962833	-	Spea_3015	-	AraC family transcriptional regulator
3004	 44.57	0	3697843..3698100	+	85	157962834	-	Spea_3016	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3005	 46.42	0	3698270..3699988	+	572	157962835	-	Spea_3017	-	pseudouridine synthase
3006	 46.78	0	3700133..3700645	-	170	157962836	-	Spea_3018	-	sterol-binding domain-containing protein
3007	 48.50	+1	3700778..3701779	+	333	157962837	-	Spea_3019	-	peptidase U32
3008	 45.34	0	3701803..3702660	+	285	157962838	-	Spea_3020	-	peptidase U32
3009	 46.42	0	3703107..3704237	+	376	157962839	-	Spea_3021	-	S-(hydroxymethyl)glutathione dehydrogenase
3010	 41.56	-1	3704358..3705062	-	234	157962840	-	Spea_3022	-	hypothetical protein
3011	 45.31	0	3705427..3706971	+	514	157962841	-	Spea_302