version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2988 48.66 +1 3676168..3677544 - 458 157962818 - Spea_3000 - MATE efflux family protein 2989 47.14 0 3677702..3678838 - 378 157962819 - Spea_3001 - cobalamin synthesis protein P47K 2990 44.74 0 3678953..3679294 - 113 157962820 - Spea_3002 - hypothetical protein 2991 44.47 0 3679577..3680995 + 472 157962821 - Spea_3003 - hypothetical protein 2992 37.36 -2 3681118..3681465 - 115 157962822 - Spea_3004 - hypothetical protein 2993 46.94 0 3681586..3682923 - 445 157962823 - Spea_3005 - DEAD/DEAH box helicase domain-containing protein 2994 44.23 0 3683235..3686429 - 1064 157962824 - Spea_3006 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2995 41.95 0 3686870..3687310 - 146 157962825 - Spea_3007 - OsmC family protein 2996 43.82 0 3687751..3688227 + 158 157962826 - Spea_3008 - thioesterase superfamily protein 2997 44.29 0 3688340..3689818 - 492 157962827 - Spea_3009 - diguanylate cyclase/phosphodiesterase 2998 46.03 0 3689943..3690785 - 280 157962828 - Spea_3010 - putative signal transduction protein 2999 46.35 0 3691074..3692441 + 455 157962829 - Spea_3011 - peptidase U32 3000 45.06 0 3692546..3693790 - 414 157962830 - Spea_3012 - carbohydrate-selective porin OprB 3001 45.56 0 3693835..3694554 - 239 157962831 - Spea_3013 - hypothetical protein 3002 47.10 0 3694964..3696343 - 459 157962832 - Spea_3014 - amidohydrolase 3003 44.91 0 3696561..3697571 - 336 157962833 - Spea_3015 - AraC family transcriptional regulator 3004 44.57 0 3697843..3698100 + 85 157962834 - Spea_3016 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3005 46.42 0 3698270..3699988 + 572 157962835 - Spea_3017 - pseudouridine synthase 3006 46.78 0 3700133..3700645 - 170 157962836 - Spea_3018 - sterol-binding domain-containing protein 3007 48.50 +1 3700778..3701779 + 333 157962837 - Spea_3019 - peptidase U32 3008 45.34 0 3701803..3702660 + 285 157962838 - Spea_3020 - peptidase U32 3009 46.42 0 3703107..3704237 + 376 157962839 - Spea_3021 - S-(hydroxymethyl)glutathione dehydrogenase 3010 41.56 -1 3704358..3705062 - 234 157962840 - Spea_3022 - hypothetical protein 3011 45.31 0 3705427..3706971 + 514 157962841 - Spea_3023 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3012 44.25 0 3707330..3708685 + 451 157962842 - Spea_3024 - nucleoside recognition domain-containing protein 3013 44.67 0 3708844..3709725 + 293 157962843 - Spea_3025 - metallophosphoesterase 3014 49.08 +1 3709871..3711229 - 452 157962844 - Spea_3026 - xanthine/uracil/vitamin C permease 3015 48.59 +1 3711580..3712824 - 414 157962845 - Spea_3027 - DEAD/DEAH box helicase domain-containing protein 3016 42.34 0 3712934..3713932 - 332 157962846 - Spea_3028 - amino acid ABC transporter periplasmic protein 3017 47.00 0 3714085..3715350 + 421 157962847 - Spea_3029 - glyceraldehyde 3-phosphate dehydrogenase 3018 42.46 0 3715510..3716079 + 189 157962848 - Spea_3030 - hypothetical protein 3019 43.14 0 3716239..3716646 + 135 157962849 - Spea_3031 - type IV pilus assembly PilZ 3020 45.92 0 3716761..3718134 - 457 157962850 - Spea_3032 - DNA repair protein RadA 3021 45.29 0 3718285..3720702 + 805 157962851 - Spea_3033 - type IV pilus assembly PilZ 3022 45.89 0 3720794..3721255 - 153 157962852 - Spea_3034 - hypothetical protein 3023 46.58 0 3721676..3722407 + 243 157962853 - Spea_3035 - SNARE associated Golgi protein 3024 41.99 0 3722797..3724632 - 611 157962854 - Spea_3036 - sulfatase 3025 48.73 +1 3724874..3725821 - 315 157962855 - Spea_3037 - polysulphide reductase NrfD 3026 48.87 +1 3725818..3726390 - 190 157962856 - Spea_3038 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3027 48.79 +1 3726403..3728679 - 758 157962857 - Spea_3039 - molybdopterin oxidoreductase 3028 47.62 0 3729023..3730807 - 594 157962858 - Spea_3040 - histidine kinase 3029 47.39 0 3731040..3731651 + 203 157962859 - Spea_3041 - two component LuxR family transcriptional regulator 3030 48.73 +1 3731722..3732630 - 302 157962860 - Spea_3042 - alpha/beta hydrolase fold 3031 46.92 0 3732940..3733947 - 335 157962861 - Spea_3043 - phosphoserine phosphatase SerB 3032 44.74 0 3734026..3735138 + 370 157962862 - Spea_3044 - membrane protein 3033 44.44 0 3735219..3735929 - 236 157962863 - Spea_3045 - purine nucleoside phosphorylase 3034 47.04 0 3736028..3737245 - 405 157962864 - Spea_3046 - phosphopentomutase 3035 47.00 0 3737259..3738590 - 443 157962865 - Spea_3047 - thymidine phosphorylase 3036 46.90 0 3738752..3739525 - 257 157962866 - Spea_3048 - deoxyribose-phosphate aldolase 3037 45.25 0 3740090..3740953 - 287 157962867 - Spea_3049 - nucleoside-specific channel-forming protein Tsx 3038 44.76 0 3741294..3742553 - 419 157962868 - Spea_3050 - nucleoside transporter 3039 41.09 -1 3742733..3743506 - 257 157962869 - Spea_3051 - TatD-related deoxyribonuclease 3040 41.38 -1 3743532..3743792 - 86 157962870 - Spea_3052 - hypothetical protein 3041 45.48 0 3743934..3745514 - 526 157962871 - Spea_3053 - peptide chain release factor 3 3042 44.52 0 3745676..3746569 - 297 157962872 - Spea_3054 - lipoprotein NlpI 3043 44.87 0 3746741..3748855 - 704 157962873 - Spea_3055 - polynucleotide phosphorylase/polyadenylase 3044 44.71 0 3749052..3751091 + 679 157962874 - Spea_3056 - diguanylate cyclase/phosphodiesterase 3045 42.96 0 3751292..3751561 - 89 157962875 - Spea_3057 - 30S ribosomal protein S15 3046 44.73 0 3751683..3752630 - 315 157962876 - Spea_3058 - tRNA pseudouridine synthase B 3047 44.76 0 3752630..3753058 - 142 157962877 - Spea_3059 - ribosome-binding factor A 3048 46.15 0 3753125..3755815 - 896 157962878 - Spea_3060 - translation initiation factor IF-2 3049 45.53 0 3755843..3757342 - 499 157962879 - Spea_3061 - transcription elongation factor NusA 3050 42.98 0 3757370..3757825 - 151 157962880 - Spea_3062 - hypothetical protein 3051 42.86 0 3758364..3758699 - 111 157962881 - Spea_3063 - preprotein translocase subunit SecG 3052 44.57 0 3758701..3759483 - 260 157962882 - Spea_3064 - Triose-phosphate isomerase 3053 48.13 0 3759680..3761017 - 445 157962883 - Spea_3065 - phosphoglucosamine mutase 3054 45.20 0 3761117..3761959 - 280 157962884 - Spea_3066 - dihydropteroate synthase 3055 46.54 0 3762018..3763970 - 650 157962885 - Spea_3067 - ATP-dependent metalloprotease FtsH 3056 47.30 0 3764031..3764660 - 209 157962886 - Spea_3068 - 23S rRNA methyltransferase J 3057 41.33 -1 3764754..3765053 + 99 157962887 - Spea_3069 - hypothetical protein 3058 44.66 0 3765146..3766054 - 302 157962888 - Spea_3070 - protein-export membrane protein SecF 3059 47.44 0 3766056..3767870 - 604 157962889 - Spea_3071 - preprotein translocase subunit SecD 3060 45.31 0 3768172..3768672 - 166 157962890 - Spea_3072 - hypothetical protein 3061 43.19 0 3768827..3769303 - 158 157962891 - Spea_3073 - transcription elongation factor GreA 3062 47.21 0 3769661..3772882 - 1073 157962892 - Spea_3074 - carbamoyl phosphate synthase large subunit 3063 44.15 0 3772911..3774056 - 381 157962893 - Spea_3075 - carbamoyl phosphate synthase small subunit 3064 47.64 0 3774250..3775074 - 274 157962894 - Spea_3076 - dihydrodipicolinate reductase 3065 45.31 0 3775138..3775755 - 205 157962895 - Spea_3077 - peptidylprolyl isomerase FKBP-type 3066 50.44 +1 3775838..3776638 - 266 157962896 - Spea_3078 - peptidase M48 Ste24p 3067 48.36 0 3776761..3777891 - 376 157962897 - Spea_3079 - chaperone protein DnaJ 3068 44.03 0 3777981..3779897 - 638 157962898 - Spea_3080 - chaperone protein DnaK 3069 44.48 0 3780204..3781118 + 304 157962899 - Spea_3081 - hypothetical protein 3070 43.62 0 3781169..3781897 - 242 157962900 - Spea_3082 - integrase catalytic region 3071 41.41 -1 3782014..3782397 - 127 157962901 - Spea_3083 - transposase 3072 48.34 0 3783022..3784287 - 421 157962902 - Spea_3084 - gamma-glutamyl phosphate reductase 3073 47.99 0 3784284..3785402 - 372 157962903 - Spea_3085 - gamma-glutamyl kinase 3074 48.06 0 3785671..3786960 - 429 157962904 - Spea_3086 - xanthine/uracil/vitamin C permease 3075 39.77 -1 3787762..3789579 - 605 157962905 - Spea_3087 - ATP-dependent OLD family endonuclease 3076 42.11 0 3791519..3791632 - 37 157962906 - Spea_3089 - hypothetical protein 3077 49.90 +1 3792760..3794298 - 512 157962907 - Spea_3090 - peptidase M17 leucyl aminopeptidase domain-containing protein 3078 47.43 0 3794531..3795991 + 486 157962908 - Spea_3091 - aminoacyl-histidine dipeptidase 3079 46.61 0 3796092..3797168 - 358 157962909 - Spea_3092 - DNA polymerase IV 3080 44.58 0 3797424..3797663 - 79 157962910 - Spea_3093 - hypothetical protein 3081 43.16 0 3797913..3798380 - 155 157962911 - Spea_3094 - bacterioferritin 3082 41.24 -1 3798393..3798860 - 155 157962912 - Spea_3095 - bacterioferritin 3083 44.14 0 3799195..3799416 - 73 157962913 - Spea_3096 - hypothetical protein 3084 44.25 0 3799429..3800445 - 338 157962914 - Spea_3097 - ApbE family lipoprotein 3085 44.71 0 3800475..3801722 - 415 157962915 - Spea_3098 - Na(+)-translocating NADH-quinone reductase subunit F 3086 43.19 0 3801770..3802378 - 202 157962916 - Spea_3099 - Na(+)-translocating NADH-quinone reductase subunit E 3087 42.97 0 3802384..3803016 - 210 157962917 - Spea_3100 - Na(+)-translocating NADH-quinone reductase subunit D 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0