IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2973	 39.32	-1	3657345..3657578	+	77	157962803	-	Spea_2985	-	hypothetical protein
2974	 42.96	0	3657742..3659196	-	484	157962804	-	Spea_2986	-	thiamine biosynthesis protein ThiI
2975	 48.71	+1	3659397..3660365	-	322	157962805	-	Spea_2987	-	flagellar motor protein MotB
2976	 43.36	0	3660370..3661137	-	255	157962806	-	Spea_2988	-	flagellar motor protein PomA
2977	 40.56	-1	3661548..3661796	+	82	157962807	-	Spea_2989	-	exodeoxyribonuclease VII, small subunit
2978	 47.28	0	3661797..3662678	+	293	157962808	-	Spea_2990	-	polyprenyl synthetase
2979	 48.12	0	3662701..3664566	+	621	157962809	-	Spea_2991	-	1-deoxy-D-xylulose-5-phosphate synthase
2980	 44.28	0	3664697..3665299	-	200	157962810	-	Spea_2992	-	GrpE protein
2981	 46.87	0	3665400..3666278	+	292	157962811	-	Spea_2993	-	ATP-NAD/AcoX kinase
2982	 48.72	+1	3666988..3668631	+	547	157962812	-	Spea_2994	-	L-lactate permease
2983	 50.00	+1	3668740..3671559	+	939	157962813	-	Spea_2995	-	FAD linked oxidase d