IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2622	 47.91	0	3201528..3202364	-	278	157962452	-	Spea_2631	-	putative transposase
2623	 45.66	0	3202856..3204112	-	418	157962453	-	Spea_2632	-	peptidase M23B
2624	 48.48	+1	3204371..3207427	-	1018	157962454	-	Spea_2633	-	SMC domain-containing protein
2625	 47.73	0	3207424..3208569	-	381	157962455	-	Spea_2634	-	nuclease SbcCD, D subunit
2626	 47.00	0	3208916..3210166	+	416	157962456	-	Spea_2635	-	valine--pyruvate transaminase
2627	 44.73	0	3210593..3214873	+	1426	157962457	-	Spea_2636	-	inner membrane lipoprotein
2628	 44.64	0	3215044..3215883	-	279	157962458	-	Spea_2637	-	Beta-lactamase
2629	 46.41	0	3215899..3216678	-	259	157962459	-	Spea_2638	-	hypothetical protein
2630	 45.23	0	3216799..3217689	+	296	157962460	-	Spea_2639	-	LysR family transcriptional regulator
2631	 45.85	0	3217724..3219697	-	657	157962461	-	Spea_2640	-	serine/threonine protein kinase
2632	 44.70	0	3219813..3220199	-	128	157962462	-	Spea_2641	-	hypothetical protein
2633	 43.29