IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2590	 49.28	+1	3165668..3166978	-	436	157962420	-	Spea_2599	-	3-ketoacyl-CoA thiolase
2591	 48.17	0	3167379..3168335	+	318	157962421	-	Spea_2600	-	ATPase
2592	 49.46	+1	3168335..3169264	+	309	157962422	-	Spea_2601	-	hypothetical protein
2593	 47.17	0	3169265..3169777	+	170	157962423	-	Spea_2602	-	hypothetical protein
2594	 46.98	0	3169771..3170781	+	336	157962424	-	Spea_2603	-	von Willebrand factor type A
2595	 46.89	0	3170784..3172745	+	653	157962425	-	Spea_2604	-	TPR repeat-containing protein
2596	 47.52	0	3172739..3174373	+	544	157962426	-	Spea_2605	-	hypothetical protein
2597	 42.73	0	3174628..3175191	+	187	157962427	-	Spea_2606	-	RNA polymerase sigma factor
2598	 44.82	0	3175184..3175888	+	234	157962428	-	Spea_2607	-	hypothetical protein
2599	 45.87	0	3176029..3177480	+	483	157962429	-	Spea_2608	-	sodium/proline symporter
2600	 44.85	0	3177827..3179146	+	439	157962430	-	Spea_2609	-	membrane protein involved in aromatic hydrocarbon degradation