version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2552 42.81 0 3118298..3119458 - 386 157962382 - Spea_2561 - porin 2553 42.15 0 3122035..3122760 - 241 157962383 - Spea_2562 - Tol-Pal system YbgF 2554 43.70 0 3122785..3123324 - 179 157962384 - Spea_2563 - peptidoglycan-associated lipoprotein 2555 46.41 0 3123349..3124671 - 440 157962385 - Spea_2564 - beta-propeller repeat-containing to-pal system protein TolB 2556 47.22 0 3124681..3125616 - 311 157962386 - Spea_2565 - Tol-Pal system TolA 2557 46.80 0 3125617..3126054 - 145 157962387 - Spea_2566 - biopolymer transport TolR 2558 43.48 0 3126054..3126743 - 229 157962388 - Spea_2567 - Tol-Pal system TolQ 2559 43.67 0 3126733..3127206 - 157 157962389 - Spea_2568 - Pol-Pal system-associated acyl-CoA thioesterase 2560 42.98 0 3127371..3129527 - 718 157962390 - Spea_2569 - prolyl oligopeptidase 2561 45.75 0 3130162..3131031 - 289 157962391 - Spea_2570 - OmpA/MotB domain-containing protein 2562 47.21 0 3131172..3131870 + 232 157962392 - Spea_2571 - ribonuclease T 2563 41.41 -1 3131978..3132361 + 127 157962393 - Spea_2572 - transposase 2564 43.35 0 3132478..3133206 + 242 157962394 - Spea_2573 - integrase catalytic region 2565 47.19 0 3133262..3133867 - 201 157962395 - Spea_2574 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 2566 45.23 0 3134184..3135503 + 439 157962396 - Spea_2575 - Na+/H+ antiporter NhaC 2567 44.66 0 3135588..3136214 - 208 157962397 - Spea_2576 - uracil phosphoribosyltransferase 2568 45.82 0 3136435..3137475 + 346 157962398 - Spea_2577 - phosphoribosylaminoimidazole synthetase 2569 47.60 0 3137475..3138119 + 214 157962399 - Spea_2578 - phosphoribosylglycinamide formyltransferase 2570 45.48 0 3138527..3140065 - 512 157962400 - Spea_2579 - hypothetical protein 2571 41.34 -1 3140202..3142163 - 653 157962401 - Spea_2580 - diguanylate cyclase 2572 46.32 0 3142705..3143451 + 248 157962402 - Spea_2581 - UMP phosphatase 2573 47.20 0 3143691..3145349 + 552 157962403 - Spea_2582 - peptidase M28 2574 47.09 0 3146167..3147831 + 554 157962404 - Spea_2583 - asparagine synthetase B 2575 50.29 +1 3147915..3148439 - 174 157962405 - Spea_2584 - tRNA/rRNA methyltransferase (SpoU) 2576 46.30 0 3148503..3148772 - 89 157962406 - Spea_2585 - YfcL protein 2577 47.42 0 3148901..3150022 - 373 157962407 - Spea_2586 - ATP-NAD/AcoX kinase 2578 47.77 0 3150053..3151216 - 387 157962408 - Spea_2587 - major facilitator transporter 2579 48.58 +1 3151216..3152310 - 364 157962409 - Spea_2588 - chorismate synthase 2580 44.02 0 3152437..3153381 - 314 157962410 - Spea_2589 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2581 46.89 0 3153461..3153991 + 176 157962411 - Spea_2590 - hypothetical protein 2582 47.77 0 3154158..3154628 - 156 157962412 - Spea_2591 - phosphohistidine phosphatase, SixA 2583 42.97 0 3154976..3157765 + 929 157962413 - Spea_2592 - peptidase M16 domain-containing protein 2584 37.51 -2 3158031..3162341 + 1436 157962414 - Spea_2593 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2585 39.76 -1 3162440..3162766 + 108 157962415 - Spea_2594 - hypothetical protein 2586 36.75 -2 3162781..3162897 + 38 157962416 - Spea_2595 - hypothetical protein 2587 41.03 -1 3162925..3163041 + 38 157962417 - Spea_2596 - hypothetical protein 2588 44.44 0 3163132..3163329 - 65 157962418 - Spea_2597 - hypothetical protein 2589 46.86 0 3163542..3165662 - 706 157962419 - Spea_2598 - multifunctional fatty acid oxidation complex subunit alpha 2590 49.28 +1 3165668..3166978 - 436 157962420 - Spea_2599 - 3-ketoacyl-CoA thiolase 2591 48.17 0 3167379..3168335 + 318 157962421 - Spea_2600 - ATPase 2592 49.46 +1 3168335..3169264 + 309 157962422 - Spea_2601 - hypothetical protein 2593 47.17 0 3169265..3169777 + 170 157962423 - Spea_2602 - hypothetical protein 2594 46.98 0 3169771..3170781 + 336 157962424 - Spea_2603 - von Willebrand factor type A 2595 46.89 0 3170784..3172745 + 653 157962425 - Spea_2604 - TPR repeat-containing protein 2596 47.52 0 3172739..3174373 + 544 157962426 - Spea_2605 - hypothetical protein 2597 42.73 0 3174628..3175191 + 187 157962427 - Spea_2606 - RNA polymerase sigma factor 2598 44.82 0 3175184..3175888 + 234 157962428 - Spea_2607 - hypothetical protein 2599 45.87 0 3176029..3177480 + 483 157962429 - Spea_2608 - sodium/proline symporter 2600 44.85 0 3177827..3179146 + 439 157962430 - Spea_2609 - membrane protein involved in aromatic hydrocarbon degradation 2601 46.10 0 3179409..3180497 + 362 157962431 - Spea_2610 - RND family efflux transporter MFP subunit 2602 47.49 0 3180533..3183817 + 1094 157962432 - Spea_2611 - acriflavin resistance protein 2603 39.73 -1 3183878..3184096 + 72 157962433 - Spea_2612 - hypothetical protein 2604 42.93 0 3184121..3184516 + 131 157962434 - Spea_2613 - rhodanese domain-containing protein 2605 40.57 -1 3184657..3184974 + 105 157962435 - Spea_2614 - hypothetical protein 2606 44.65 0 3185044..3185856 - 270 157962436 - Spea_2615 - hypothetical protein 2607 43.49 0 3185955..3186584 - 209 157962437 - Spea_2616 - GTP cyclohydrolase II 2608 44.26 0 3186800..3187156 - 118 157962438 - Spea_2617 - hypothetical protein 2609 44.52 0 3187312..3187776 - 154 157962439 - Spea_2618 - anaerobic ribonucleoside-triphosphate reductase activating protein 2610 45.89 0 3187913..3190030 - 705 157962440 - Spea_2619 - anaerobic ribonucleoside triphosphate reductase 2611 45.67 0 3190435..3191115 - 226 157962441 - Spea_2620 - hypothetical protein 2612 44.09 0 3191196..3191660 - 154 157962442 - Spea_2621 - MarR family transcriptional regulator 2613 48.25 0 3191827..3192825 + 332 157962443 - Spea_2622 - alcohol dehydrogenase 2614 49.54 +1 3193062..3194048 - 328 157962444 - Spea_2623 - patatin 2615 44.91 0 3194312..3195658 + 448 157962445 - Spea_2624 - DEAD/DEAH box helicase domain-containing protein 2616 40.77 -1 3196060..3196503 + 147 157962446 - Spea_2625 - hypothetical protein 2617 42.21 0 3196592..3197098 + 168 157962447 - Spea_2626 - hypothetical protein 2618 45.86 0 3197346..3197744 + 132 157962448 - Spea_2627 - hypothetical protein 2619 43.32 0 3198003..3198983 - 326 157962449 - Spea_2628 - hypothetical protein 2620 41.76 -1 3199305..3199577 - 90 157962450 - Spea_2629 - integron integrase 2621 38.57 -2 3199976..3200605 + 209 157962451 - Spea_2630 - hypothetical protein 2622 47.91 0 3201528..3202364 - 278 157962452 - Spea_2631 - putative transposase 2623 45.66 0 3202856..3204112 - 418 157962453 - Spea_2632 - peptidase M23B 2624 48.48 +1 3204371..3207427 - 1018 157962454 - Spea_2633 - SMC domain-containing protein 2625 47.73 0 3207424..3208569 - 381 157962455 - Spea_2634 - nuclease SbcCD, D subunit 2626 47.00 0 3208916..3210166 + 416 157962456 - Spea_2635 - valine--pyruvate transaminase 2627 44.73 0 3210593..3214873 + 1426 157962457 - Spea_2636 - inner membrane lipoprotein 2628 44.64 0 3215044..3215883 - 279 157962458 - Spea_2637 - Beta-lactamase 2629 46.41 0 3215899..3216678 - 259 157962459 - Spea_2638 - hypothetical protein 2630 45.23 0 3216799..3217689 + 296 157962460 - Spea_2639 - LysR family transcriptional regulator 2631 45.85 0 3217724..3219697 - 657 157962461 - Spea_2640 - serine/threonine protein kinase 2632 44.70 0 3219813..3220199 - 128 157962462 - Spea_2641 - hypothetical protein 2633 43.29 0 3220219..3220449 - 76 157962463 - Spea_2642 - RNA-binding S4 domain-containing protein 2634 40.82 -1 3220520..3221053 - 177 157962464 - Spea_2643 - GCN5-related N-acetyltransferase 2635 44.09 0 3221088..3221366 - 92 157962465 - Spea_2644 - PpiC-type peptidyl-prolyl cis-trans isomerase 2636 44.24 0 3221500..3223332 - 610 157962466 - Spea_2645 - hypothetical protein 2637 39.15 -1 3223402..3223917 + 171 157962467 - Spea_2646 - diguanylate cyclase 2638 41.35 -1 3223991..3225238 - 415 157962468 - Spea_2647 - tetratricopeptide domain-containing protein 2639 45.09 0 3225241..3225861 - 206 157962469 - Spea_2648 - TonB family protein 2640 44.69 0 3225863..3226267 - 134 157962470 - Spea_2649 - biopolymer transport protein ExbD/TolR 2641 46.29 0 3226281..3226805 - 174 157962471 - Spea_2650 - MotA/TolQ/ExbB proton channel 2642 44.32 0 3226805..3228160 - 451 157962472 - Spea_2651 - MotA/TolQ/ExbB proton channel 2643 43.81 0 3228160..3228942 - 260 157962473 - Spea_2652 - hypothetical protein 2644 43.27 0 3229718..3232564 - 948 157962474 - Spea_2653 - TonB-dependent receptor 2645 42.24 0 3233401..3234612 - 403 157962475 - Spea_2654 - porin 2646 45.79 0 3234846..3237245 - 799 157962476 - Spea_2655 - DNA polymerase II 2647 46.45 0 3237346..3239418 + 690 157962477 - Spea_2656 - ATP-dependent DNA helicase DinG 2648 45.48 0 3239427..3240200 + 257 157962478 - Spea_2657 - hypothetical protein 2649 40.27 -1 3240197..3240859 + 220 157962479 - Spea_2658 - primosomal replication protein N'', putative 2650 45.85 0 3240869..3241579 + 236 157962480 - Spea_2659 - hypothetical protein 2651 44.81 0 3241610..3242524 + 304 157962481 - Spea_2660 - histone deacetylase superfamily protein 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0