version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2520 45.85 0 3080451..3081161 + 236 157962350 - Spea_2529 - leucyl/phenylalanyl-tRNA--protein transferase 2521 43.53 0 3081151..3081876 + 241 157962351 - Spea_2530 - arginyl-tRNA-protein transferase 2522 41.55 -1 3081991..3082209 + 72 157962352 - Spea_2531 - translation initiation factor IF-1 2523 47.72 0 3082342..3084600 - 752 157962353 - Spea_2532 - ATP-dependent Clp protease, ATP-binding subunit clpA 2524 37.86 -2 3084639..3084947 - 102 157962354 - Spea_2533 - ATP-dependent Clp protease adaptor protein ClpS 2525 45.89 0 3085187..3085393 + 68 157962355 - Spea_2534 - cold-shock DNA-binding domain-containing protein 2526 45.39 0 3085561..3087783 - 740 157962356 - Spea_2535 - isocitrate dehydrogenase, NADP-dependent 2527 43.95 0 3088087..3088821 + 244 157962357 - Spea_2536 - pseudouridine synthase 2528 42.83 0 3088832..3089284 + 150 157962358 - Spea_2537 - NUDIX hydrolase 2529 44.70 0 3089471..3090667 + 398 157962359 - Spea_2538 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2530 43.69 0 3090671..3091288 + 205 157962360 - Spea_2539 - hypothetical protein 2531 44.86 0 3091320..3092690 + 456 157962361 - Spea_2540 - adenylosuccinate lyase 2532 43.15 0 3092865..3093995 + 376 157962362 - Spea_2541 - cupin 4 family protein 2533 43.19 0 3094086..3094511 - 141 157962363 - Spea_2542 - hypothetical protein 2534 45.64 0 3094774..3095805 + 343 157962364 - Spea_2543 - Glu/Leu/Phe/Val dehydrogenase dimerisation region 2535 42.03 0 3095982..3096326 + 114 157962365 - Spea_2544 - hypothetical protein 2536 46.86 0 3096391..3096804 - 137 157962366 - Spea_2545 - hypothetical protein 2537 42.27 0 3096901..3097314 - 137 157962367 - Spea_2546 - MarR family transcriptional regulator 2538 39.41 -1 3097471..3097914 - 147 157962368 - Spea_2547 - hypothetical protein 2539 45.72 0 3098005..3101055 - 1016 157962369 - Spea_2548 - FAD linked oxidase domain-containing protein 2540 45.27 0 3101185..3103554 - 789 157962370 - Spea_2549 - phosphoenolpyruvate synthase 2541 41.21 -1 3103681..3104493 + 270 157962371 - Spea_2550 - hypothetical protein 2542 45.79 0 3104684..3105751 + 355 157962372 - Spea_2551 - phospho-2-dehydro-3-deoxyheptonate aldolase 2543 40.04 -1 3106152..3106598 - 148 157962373 - Spea_2552 - GCN5-related N-acetyltransferase 2544 45.92 0 3106930..3107358 + 142 157962374 - Spea_2553 - thioesterase superfamily protein 2545 43.48 0 3107611..3108270 + 219 157962375 - Spea_2554 - two component LuxR family transcriptional regulator 2546 46.05 0 3108354..3109643 - 429 157962376 - Spea_2555 - FAD dependent oxidoreductase 2547 47.45 0 3109992..3110324 + 110 157962377 - Spea_2556 - hypothetical protein 2548 45.23 0 3110390..3113818 - 1142 157962378 - Spea_2557 - histidine kinase 2549 48.13 0 3113995..3115947 + 650 157962379 - Spea_2558 - acetyl-CoA synthetase 2550 43.37 0 3116131..3117873 + 580 157962380 - Spea_2559 - type III restriction protein res subunit 2551 39.70 -1 3117970..3118236 + 88 157962381 - Spea_2560 - glutaredoxin 1 2552 42.81 0 3118298..3119458 - 386 157962382 - Spea_2561 - porin 2553 42.15 0 3122035..3122760 - 241 157962383 - Spea_2562 - Tol-Pal system YbgF 2554 43.70 0 3122785..3123324 - 179 157962384 - Spea_2563 - peptidoglycan-associated lipoprotein 2555 46.41 0 3123349..3124671 - 440 157962385 - Spea_2564 - beta-propeller repeat-containing to-pal system protein TolB 2556 47.22 0 3124681..3125616 - 311 157962386 - Spea_2565 - Tol-Pal system TolA 2557 46.80 0 3125617..3126054 - 145 157962387 - Spea_2566 - biopolymer transport TolR 2558 43.48 0 3126054..3126743 - 229 157962388 - Spea_2567 - Tol-Pal system TolQ 2559 43.67 0 3126733..3127206 - 157 157962389 - Spea_2568 - Pol-Pal system-associated acyl-CoA thioesterase 2560 42.98 0 3127371..3129527 - 718 157962390 - Spea_2569 - prolyl oligopeptidase 2561 45.75 0 3130162..3131031 - 289 157962391 - Spea_2570 - OmpA/MotB domain-containing protein 2562 47.21 0 3131172..3131870 + 232 157962392 - Spea_2571 - ribonuclease T 2563 41.41 -1 3131978..3132361 + 127 157962393 - Spea_2572 - transposase 2564 43.35 0 3132478..3133206 + 242 157962394 - Spea_2573 - integrase catalytic region 2565 47.19 0 3133262..3133867 - 201 157962395 - Spea_2574 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 2566 45.23 0 3134184..3135503 + 439 157962396 - Spea_2575 - Na+/H+ antiporter NhaC 2567 44.66 0 3135588..3136214 - 208 157962397 - Spea_2576 - uracil phosphoribosyltransferase 2568 45.82 0 3136435..3137475 + 346 157962398 - Spea_2577 - phosphoribosylaminoimidazole synthetase 2569 47.60 0 3137475..3138119 + 214 157962399 - Spea_2578 - phosphoribosylglycinamide formyltransferase 2570 45.48 0 3138527..3140065 - 512 157962400 - Spea_2579 - hypothetical protein 2571 41.34 -1 3140202..3142163 - 653 157962401 - Spea_2580 - diguanylate cyclase 2572 46.32 0 3142705..3143451 + 248 157962402 - Spea_2581 - UMP phosphatase 2573 47.20 0 3143691..3145349 + 552 157962403 - Spea_2582 - peptidase M28 2574 47.09 0 3146167..3147831 + 554 157962404 - Spea_2583 - asparagine synthetase B 2575 50.29 +1 3147915..3148439 - 174 157962405 - Spea_2584 - tRNA/rRNA methyltransferase (SpoU) 2576 46.30 0 3148503..3148772 - 89 157962406 - Spea_2585 - YfcL protein 2577 47.42 0 3148901..3150022 - 373 157962407 - Spea_2586 - ATP-NAD/AcoX kinase 2578 47.77 0 3150053..3151216 - 387 157962408 - Spea_2587 - major facilitator transporter 2579 48.58 +1 3151216..3152310 - 364 157962409 - Spea_2588 - chorismate synthase 2580 44.02 0 3152437..3153381 - 314 157962410 - Spea_2589 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2581 46.89 0 3153461..3153991 + 176 157962411 - Spea_2590 - hypothetical protein 2582 47.77 0 3154158..3154628 - 156 157962412 - Spea_2591 - phosphohistidine phosphatase, SixA 2583 42.97 0 3154976..3157765 + 929 157962413 - Spea_2592 - peptidase M16 domain-containing protein 2584 37.51 -2 3158031..3162341 + 1436 157962414 - Spea_2593 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2585 39.76 -1 3162440..3162766 + 108 157962415 - Spea_2594 - hypothetical protein 2586 36.75 -2 3162781..3162897 + 38 157962416 - Spea_2595 - hypothetical protein 2587 41.03 -1 3162925..3163041 + 38 157962417 - Spea_2596 - hypothetical protein 2588 44.44 0 3163132..3163329 - 65 157962418 - Spea_2597 - hypothetical protein 2589 46.86 0 3163542..3165662 - 706 157962419 - Spea_2598 - multifunctional fatty acid oxidation complex subunit alpha 2590 49.28 +1 3165668..3166978 - 436 157962420 - Spea_2599 - 3-ketoacyl-CoA thiolase 2591 48.17 0 3167379..3168335 + 318 157962421 - Spea_2600 - ATPase 2592 49.46 +1 3168335..3169264 + 309 157962422 - Spea_2601 - hypothetical protein 2593 47.17 0 3169265..3169777 + 170 157962423 - Spea_2602 - hypothetical protein 2594 46.98 0 3169771..3170781 + 336 157962424 - Spea_2603 - von Willebrand factor type A 2595 46.89 0 3170784..3172745 + 653 157962425 - Spea_2604 - TPR repeat-containing protein 2596 47.52 0 3172739..3174373 + 544 157962426 - Spea_2605 - hypothetical protein 2597 42.73 0 3174628..3175191 + 187 157962427 - Spea_2606 - RNA polymerase sigma factor 2598 44.82 0 3175184..3175888 + 234 157962428 - Spea_2607 - hypothetical protein 2599 45.87 0 3176029..3177480 + 483 157962429 - Spea_2608 - sodium/proline symporter 2600 44.85 0 3177827..3179146 + 439 157962430 - Spea_2609 - membrane protein involved in aromatic hydrocarbon degradation 2601 46.10 0 3179409..3180497 + 362 157962431 - Spea_2610 - RND family efflux transporter MFP subunit 2602 47.49 0 3180533..3183817 + 1094 157962432 - Spea_2611 - acriflavin resistance protein 2603 39.73 -1 3183878..3184096 + 72 157962433 - Spea_2612 - hypothetical protein 2604 42.93 0 3184121..3184516 + 131 157962434 - Spea_2613 - rhodanese domain-containing protein 2605 40.57 -1 3184657..3184974 + 105 157962435 - Spea_2614 - hypothetical protein 2606 44.65 0 3185044..3185856 - 270 157962436 - Spea_2615 - hypothetical protein 2607 43.49 0 3185955..3186584 - 209 157962437 - Spea_2616 - GTP cyclohydrolase II 2608 44.26 0 3186800..3187156 - 118 157962438 - Spea_2617 - hypothetical protein 2609 44.52 0 3187312..3187776 - 154 157962439 - Spea_2618 - anaerobic ribonucleoside-triphosphate reductase activating protein 2610 45.89 0 3187913..3190030 - 705 157962440 - Spea_2619 - anaerobic ribonucleoside triphosphate reductase 2611 45.67 0 3190435..3191115 - 226 157962441 - Spea_2620 - hypothetical protein 2612 44.09 0 3191196..3191660 - 154 157962442 - Spea_2621 - MarR family transcriptional regulator 2613 48.25 0 3191827..3192825 + 332 157962443 - Spea_2622 - alcohol dehydrogenase 2614 49.54 +1 3193062..3194048 - 328 157962444 - Spea_2623 - patatin 2615 44.91 0 3194312..3195658 + 448 157962445 - Spea_2624 - DEAD/DEAH box helicase domain-containing protein 2616 40.77 -1 3196060..3196503 + 147 157962446 - Spea_2625 - hypothetical protein 2617 42.21 0 3196592..3197098 + 168 157962447 - Spea_2626 - hypothetical protein 2618 45.86 0 3197346..3197744 + 132 157962448 - Spea_2627 - hypothetical protein 2619 43.32 0 3198003..3198983 - 326 157962449 - Spea_2628 - hypothetical protein 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0