version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2489 46.78 0 3043524..3043694 - 56 157962319 - Spea_2498 - 50S ribosomal protein L32 2490 44.76 0 3043712..3044236 - 174 157962320 - Spea_2499 - hypothetical protein 2491 44.67 0 3045122..3045703 + 193 157962321 - Spea_2500 - maf protein 2492 41.80 -1 3045885..3047243 + 452 157962322 - Spea_2501 - diguanylate cyclase with PAS/PAC sensor 2493 42.62 0 3047445..3048047 - 200 157962323 - Spea_2502 - HAD family hydrolase 2494 43.23 0 3048089..3049048 - 319 157962324 - Spea_2503 - RluA family pseudouridine synthase 2495 46.91 0 3049646..3052900 + 1084 157962325 - Spea_2504 - ribonuclease 2496 44.81 0 3053031..3054590 + 519 157962326 - Spea_2505 - sulphate transporter 2497 43.96 0 3054666..3055568 - 300 157962327 - Spea_2506 - bifunctional methionine sulfoxide reductase B/A protein 2498 42.26 0 3056014..3056853 + 279 157962328 - Spea_2507 - 2OG-Fe(II) oxygenase 2499 44.94 0 3056971..3057909 + 312 157962329 - Spea_2508 - ribosomal biogenesis GTPase 2500 40.70 -1 3058044..3058532 - 162 157962330 - Spea_2509 - protein tyrosine phosphatase 2501 43.38 0 3058779..3059435 + 218 157962331 - Spea_2510 - nitroreductase 2502 42.12 0 3059563..3060438 - 291 157962332 - Spea_2511 - DNA ligase 2503 44.35 0 3060701..3061072 + 123 157962333 - Spea_2512 - diacylglycerol kinase 2504 42.50 0 3061478..3062350 + 290 157962334 - Spea_2513 - hypothetical protein 2505 45.42 0 3063013..3064038 + 341 157962335 - Spea_2514 - diguanylate cyclase 2506 44.93 0 3064166..3064855 - 229 157962336 - Spea_2515 - sortase family protein 2507 46.08 0 3064855..3067224 - 789 157962337 - Spea_2516 - cell wall anchor domain-containing protein 2508 48.80 +1 3067306..3068055 - 249 157962338 - Spea_2517 - OmpA/MotB domain-containing protein 2509 46.46 0 3068300..3068992 + 230 157962339 - Spea_2518 - two component transcriptional regulator 2510 47.83 0 3069089..3071275 + 728 157962340 - Spea_2519 - histidine kinase 2511 47.34 0 3071448..3072668 + 406 157962341 - Spea_2520 - cystathionine beta-lyase 2512 46.91 0 3072832..3073413 + 193 157962342 - Spea_2521 - hypothetical protein 2513 45.05 0 3073523..3074017 - 164 157962343 - Spea_2522 - CreA family protein 2514 48.98 +1 3074106..3075473 - 455 157962344 - Spea_2523 - putative chaperone 2515 44.72 0 3075633..3076616 - 327 157962345 - Spea_2524 - rhodanese domain-containing protein 2516 44.35 0 3076901..3077626 + 241 157962346 - Spea_2525 - glutathione S-transferase domain-containing protein 2517 46.53 0 3077683..3078288 - 201 157962347 - Spea_2526 - lysine exporter protein LysE/YggA 2518 46.35 0 3078453..3079820 + 455 157962348 - Spea_2527 - transcriptional regulator 2519 46.75 0 3079920..3080396 - 158 157962349 - Spea_2528 - 17 kDa surface antigen 2520 45.85 0 3080451..3081161 + 236 157962350 - Spea_2529 - leucyl/phenylalanyl-tRNA--protein transferase 2521 43.53 0 3081151..3081876 + 241 157962351 - Spea_2530 - arginyl-tRNA-protein transferase 2522 41.55 -1 3081991..3082209 + 72 157962352 - Spea_2531 - translation initiation factor IF-1 2523 47.72 0 3082342..3084600 - 752 157962353 - Spea_2532 - ATP-dependent Clp protease, ATP-binding subunit clpA 2524 37.86 -2 3084639..3084947 - 102 157962354 - Spea_2533 - ATP-dependent Clp protease adaptor protein ClpS 2525 45.89 0 3085187..3085393 + 68 157962355 - Spea_2534 - cold-shock DNA-binding domain-containing protein 2526 45.39 0 3085561..3087783 - 740 157962356 - Spea_2535 - isocitrate dehydrogenase, NADP-dependent 2527 43.95 0 3088087..3088821 + 244 157962357 - Spea_2536 - pseudouridine synthase 2528 42.83 0 3088832..3089284 + 150 157962358 - Spea_2537 - NUDIX hydrolase 2529 44.70 0 3089471..3090667 + 398 157962359 - Spea_2538 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2530 43.69 0 3090671..3091288 + 205 157962360 - Spea_2539 - hypothetical protein 2531 44.86 0 3091320..3092690 + 456 157962361 - Spea_2540 - adenylosuccinate lyase 2532 43.15 0 3092865..3093995 + 376 157962362 - Spea_2541 - cupin 4 family protein 2533 43.19 0 3094086..3094511 - 141 157962363 - Spea_2542 - hypothetical protein 2534 45.64 0 3094774..3095805 + 343 157962364 - Spea_2543 - Glu/Leu/Phe/Val dehydrogenase dimerisation region 2535 42.03 0 3095982..3096326 + 114 157962365 - Spea_2544 - hypothetical protein 2536 46.86 0 3096391..3096804 - 137 157962366 - Spea_2545 - hypothetical protein 2537 42.27 0 3096901..3097314 - 137 157962367 - Spea_2546 - MarR family transcriptional regulator 2538 39.41 -1 3097471..3097914 - 147 157962368 - Spea_2547 - hypothetical protein 2539 45.72 0 3098005..3101055 - 1016 157962369 - Spea_2548 - FAD linked oxidase domain-containing protein 2540 45.27 0 3101185..3103554 - 789 157962370 - Spea_2549 - phosphoenolpyruvate synthase 2541 41.21 -1 3103681..3104493 + 270 157962371 - Spea_2550 - hypothetical protein 2542 45.79 0 3104684..3105751 + 355 157962372 - Spea_2551 - phospho-2-dehydro-3-deoxyheptonate aldolase 2543 40.04 -1 3106152..3106598 - 148 157962373 - Spea_2552 - GCN5-related N-acetyltransferase 2544 45.92 0 3106930..3107358 + 142 157962374 - Spea_2553 - thioesterase superfamily protein 2545 43.48 0 3107611..3108270 + 219 157962375 - Spea_2554 - two component LuxR family transcriptional regulator 2546 46.05 0 3108354..3109643 - 429 157962376 - Spea_2555 - FAD dependent oxidoreductase 2547 47.45 0 3109992..3110324 + 110 157962377 - Spea_2556 - hypothetical protein 2548 45.23 0 3110390..3113818 - 1142 157962378 - Spea_2557 - histidine kinase 2549 48.13 0 3113995..3115947 + 650 157962379 - Spea_2558 - acetyl-CoA synthetase 2550 43.37 0 3116131..3117873 + 580 157962380 - Spea_2559 - type III restriction protein res subunit 2551 39.70 -1 3117970..3118236 + 88 157962381 - Spea_2560 - glutaredoxin 1 2552 42.81 0 3118298..3119458 - 386 157962382 - Spea_2561 - porin 2553 42.15 0 3122035..3122760 - 241 157962383 - Spea_2562 - Tol-Pal system YbgF 2554 43.70 0 3122785..3123324 - 179 157962384 - Spea_2563 - peptidoglycan-associated lipoprotein 2555 46.41 0 3123349..3124671 - 440 157962385 - Spea_2564 - beta-propeller repeat-containing to-pal system protein TolB 2556 47.22 0 3124681..3125616 - 311 157962386 - Spea_2565 - Tol-Pal system TolA 2557 46.80 0 3125617..3126054 - 145 157962387 - Spea_2566 - biopolymer transport TolR 2558 43.48 0 3126054..3126743 - 229 157962388 - Spea_2567 - Tol-Pal system TolQ 2559 43.67 0 3126733..3127206 - 157 157962389 - Spea_2568 - Pol-Pal system-associated acyl-CoA thioesterase 2560 42.98 0 3127371..3129527 - 718 157962390 - Spea_2569 - prolyl oligopeptidase 2561 45.75 0 3130162..3131031 - 289 157962391 - Spea_2570 - OmpA/MotB domain-containing protein 2562 47.21 0 3131172..3131870 + 232 157962392 - Spea_2571 - ribonuclease T 2563 41.41 -1 3131978..3132361 + 127 157962393 - Spea_2572 - transposase 2564 43.35 0 3132478..3133206 + 242 157962394 - Spea_2573 - integrase catalytic region 2565 47.19 0 3133262..3133867 - 201 157962395 - Spea_2574 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 2566 45.23 0 3134184..3135503 + 439 157962396 - Spea_2575 - Na+/H+ antiporter NhaC 2567 44.66 0 3135588..3136214 - 208 157962397 - Spea_2576 - uracil phosphoribosyltransferase 2568 45.82 0 3136435..3137475 + 346 157962398 - Spea_2577 - phosphoribosylaminoimidazole synthetase 2569 47.60 0 3137475..3138119 + 214 157962399 - Spea_2578 - phosphoribosylglycinamide formyltransferase 2570 45.48 0 3138527..3140065 - 512 157962400 - Spea_2579 - hypothetical protein 2571 41.34 -1 3140202..3142163 - 653 157962401 - Spea_2580 - diguanylate cyclase 2572 46.32 0 3142705..3143451 + 248 157962402 - Spea_2581 - UMP phosphatase 2573 47.20 0 3143691..3145349 + 552 157962403 - Spea_2582 - peptidase M28 2574 47.09 0 3146167..3147831 + 554 157962404 - Spea_2583 - asparagine synthetase B 2575 50.29 +1 3147915..3148439 - 174 157962405 - Spea_2584 - tRNA/rRNA methyltransferase (SpoU) 2576 46.30 0 3148503..3148772 - 89 157962406 - Spea_2585 - YfcL protein 2577 47.42 0 3148901..3150022 - 373 157962407 - Spea_2586 - ATP-NAD/AcoX kinase 2578 47.77 0 3150053..3151216 - 387 157962408 - Spea_2587 - major facilitator transporter 2579 48.58 +1 3151216..3152310 - 364 157962409 - Spea_2588 - chorismate synthase 2580 44.02 0 3152437..3153381 - 314 157962410 - Spea_2589 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2581 46.89 0 3153461..3153991 + 176 157962411 - Spea_2590 - hypothetical protein 2582 47.77 0 3154158..3154628 - 156 157962412 - Spea_2591 - phosphohistidine phosphatase, SixA 2583 42.97 0 3154976..3157765 + 929 157962413 - Spea_2592 - peptidase M16 domain-containing protein 2584 37.51 -2 3158031..3162341 + 1436 157962414 - Spea_2593 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2585 39.76 -1 3162440..3162766 + 108 157962415 - Spea_2594 - hypothetical protein 2586 36.75 -2 3162781..3162897 + 38 157962416 - Spea_2595 - hypothetical protein 2587 41.03 -1 3162925..3163041 + 38 157962417 - Spea_2596 - hypothetical protein 2588 44.44 0 3163132..3163329 - 65 157962418 - Spea_2597 - hypothetical protein 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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