IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2464	 42.92	0	3019143..3020018	-	291	157962294	-	Spea_2473	-	hypothetical protein
2465	 35.35	-2	3020193..3020489	-	98	157962295	-	Spea_2474	-	hypothetical protein
2466	 42.66	0	3020589..3020942	-	117	157962296	-	Spea_2475	-	hypothetical protein
2467	 43.06	0	3021310..3021885	-	191	157962297	-	Spea_2476	-	YceI family protein
2468	 43.97	0	3022089..3022727	-	212	157962298	-	Spea_2477	-	pyridoxamine 5'-phosphate oxidase
2469	 45.81	0	3022869..3023798	-	309	157962299	-	Spea_2478	-	agmatinase
2470	 40.17	-1	3023823..3024743	-	306	157962300	-	Spea_2479	-	adenosylmethionine decarboxylase
2471	 44.98	0	3025010..3026923	-	637	157962301	-	Spea_2480	-	arginine decarboxylase
2472	 40.53	-1	3027546..3028379	+	277	157962302	-	Spea_2481	-	hypothetical protein
2473	 45.78	0	3028508..3029158	+	216	157962303	-	Spea_2482	-	hypothetical protein
2474	 43.46	0	3029284..3030093	+	269	157962304	-	Spea_2483	-	hypothetical protein
2475	 44.04	0	3030090..3030995	+	301