version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2430 43.35 0 2983416..2985002 + 528 157962260 - Spea_2439 - sodium/proton antiporter 2431 47.40 0 2985081..2985599 + 172 157962261 - Spea_2440 - disulphide bond formation protein DsbB 2432 43.54 0 2985663..2986103 - 146 157962262 - Spea_2441 - hypothetical protein 2433 43.88 0 2986307..2987302 - 331 157962263 - Spea_2442 - lytic murein transglycosylase 2434 37.94 -2 2987344..2987625 - 93 157962264 - Spea_2443 - hypothetical protein 2435 44.87 0 2987700..2988410 + 236 157962265 - Spea_2444 - septum site-determining protein MinC 2436 43.46 0 2988442..2989251 + 269 157962266 - Spea_2445 - septum site-determining protein MinD 2437 45.59 0 2989255..2989515 + 86 157962267 - Spea_2446 - cell division topological specificity factor MinE 2438 41.08 -1 2989575..2990684 - 369 157962268 - Spea_2447 - ribonuclease D 2439 44.48 0 2990779..2992446 - 555 157962269 - Spea_2448 - long-chain-fatty-acid--CoA ligase 2440 44.52 0 2992633..2993508 - 291 157962270 - Spea_2449 - alpha/beta hydrolase fold 2441 43.80 0 2993517..2994347 - 276 157962271 - Spea_2450 - hypothetical protein 2442 47.20 0 2994423..2995136 - 237 157962272 - Spea_2451 - hypothetical protein 2443 45.31 0 2995129..2995437 - 102 157962273 - Spea_2452 - hypothetical protein 2444 48.54 +1 2995486..2996202 - 238 157962274 - Spea_2453 - peptidase M22 glycoprotease 2445 38.73 -1 2996567..2996992 + 141 157962275 - Spea_2454 - hypothetical protein 2446 45.33 0 2996985..2998910 - 641 157962276 - Spea_2455 - helicase c2 2447 44.78 0 2999471..3000370 + 299 157962277 - Spea_2456 - ATP phosphoribosyltransferase 2448 49.51 +1 3000375..3001703 + 442 157962278 - Spea_2457 - histidinol dehydrogenase 2449 46.78 0 3001700..3002755 + 351 157962279 - Spea_2458 - histidinol-phosphate aminotransferase 2450 46.76 0 3002843..3003937 + 364 157962280 - Spea_2459 - imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2451 48.79 +1 3003934..3004677 + 247 157962281 - Spea_2460 - imidazole glycerol phosphate synthase subunit HisH 2452 45.53 0 3004674..3005411 + 245 157962282 - Spea_2461 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2453 47.16 0 3005393..3006166 + 257 157962283 - Spea_2462 - imidazole glycerol phosphate synthase subunit HisF 2454 45.38 0 3006202..3006840 + 212 157962284 - Spea_2463 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2455 43.84 0 3007082..3008185 + 367 157962285 - Spea_2464 - phosphoribosylaminoimidazole-succinocarboxamide synthase 2456 41.60 -1 3008289..3008687 + 132 157962286 - Spea_2465 - transposase 2457 39.71 -1 3008771..3009523 + 250 157962287 - Spea_2466 - integrase catalytic region 2458 43.98 0 3009622..3010560 - 312 157962288 - Spea_2467 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2459 46.80 0 3010638..3010934 - 98 157962289 - Spea_2468 - integration host factor, alpha subunit 2460 44.97 0 3010939..3013326 - 795 157962290 - Spea_2469 - phenylalanyl-tRNA synthetase subunit beta 2461 44.68 0 3013343..3014329 - 328 157962291 - Spea_2470 - phenylalanyl-tRNA synthetase subunit alpha 2462 44.47 0 3014768..3016267 + 499 157962292 - Spea_2471 - methyl-accepting chemotaxis sensory transducer 2463 41.14 -1 3016457..3019057 + 866 157962293 - Spea_2472 - putative PAS/PAC sensor protein 2464 42.92 0 3019143..3020018 - 291 157962294 - Spea_2473 - hypothetical protein 2465 35.35 -2 3020193..3020489 - 98 157962295 - Spea_2474 - hypothetical protein 2466 42.66 0 3020589..3020942 - 117 157962296 - Spea_2475 - hypothetical protein 2467 43.06 0 3021310..3021885 - 191 157962297 - Spea_2476 - YceI family protein 2468 43.97 0 3022089..3022727 - 212 157962298 - Spea_2477 - pyridoxamine 5'-phosphate oxidase 2469 45.81 0 3022869..3023798 - 309 157962299 - Spea_2478 - agmatinase 2470 40.17 -1 3023823..3024743 - 306 157962300 - Spea_2479 - adenosylmethionine decarboxylase 2471 44.98 0 3025010..3026923 - 637 157962301 - Spea_2480 - arginine decarboxylase 2472 40.53 -1 3027546..3028379 + 277 157962302 - Spea_2481 - hypothetical protein 2473 45.78 0 3028508..3029158 + 216 157962303 - Spea_2482 - hypothetical protein 2474 43.46 0 3029284..3030093 + 269 157962304 - Spea_2483 - hypothetical protein 2475 44.04 0 3030090..3030995 + 301 157962305 - Spea_2484 - ABC transporter related 2476 42.51 0 3031397..3031603 - 68 157962306 - Spea_2485 - cold-shock DNA-binding domain-containing protein 2477 41.26 -1 3031906..3032712 - 268 157962307 - Spea_2486 - 23S rRNA methyltransferase A 2478 43.31 0 3033204..3034616 + 470 157962308 - Spea_2487 - exonuclease I 2479 48.15 0 3034712..3035602 + 296 157962309 - Spea_2488 - cytidine deaminase 2480 48.40 0 3035681..3036556 - 291 157962310 - Spea_2489 - 6-phosphogluconate dehydrogenase NAD-binding 2481 47.11 0 3036694..3037194 - 166 157962311 - Spea_2490 - thioesterase superfamily protein 2482 40.11 -1 3037260..3037628 - 122 157962312 - Spea_2491 - hypothetical protein 2483 47.46 0 3037867..3039105 - 412 157962313 - Spea_2492 - Beta-ketoacyl synthase 2484 40.60 -1 3039360..3039593 - 77 157962314 - Spea_2493 - acyl carrier protein 2485 44.18 0 3039750..3040496 - 248 157962315 - Spea_2494 - 3-oxoacyl-(acyl-carrier-protein) reductase 2486 46.17 0 3040506..3041432 - 308 157962316 - Spea_2495 - malonyl CoA-acyl carrier protein transacylase 2487 46.77 0 3041510..3042469 - 319 157962317 - Spea_2496 - 3-oxoacyl-(acyl carrier protein) synthase III 2488 44.80 0 3042480..3043508 - 342 157962318 - Spea_2497 - putative glycerol-3-phosphate acyltransferase PlsX 2489 46.78 0 3043524..3043694 - 56 157962319 - Spea_2498 - 50S ribosomal protein L32 2490 44.76 0 3043712..3044236 - 174 157962320 - Spea_2499 - hypothetical protein 2491 44.67 0 3045122..3045703 + 193 157962321 - Spea_2500 - maf protein 2492 41.80 -1 3045885..3047243 + 452 157962322 - Spea_2501 - diguanylate cyclase with PAS/PAC sensor 2493 42.62 0 3047445..3048047 - 200 157962323 - Spea_2502 - HAD family hydrolase 2494 43.23 0 3048089..3049048 - 319 157962324 - Spea_2503 - RluA family pseudouridine synthase 2495 46.91 0 3049646..3052900 + 1084 157962325 - Spea_2504 - ribonuclease 2496 44.81 0 3053031..3054590 + 519 157962326 - Spea_2505 - sulphate transporter 2497 43.96 0 3054666..3055568 - 300 157962327 - Spea_2506 - bifunctional methionine sulfoxide reductase B/A protein 2498 42.26 0 3056014..3056853 + 279 157962328 - Spea_2507 - 2OG-Fe(II) oxygenase 2499 44.94 0 3056971..3057909 + 312 157962329 - Spea_2508 - ribosomal biogenesis GTPase 2500 40.70 -1 3058044..3058532 - 162 157962330 - Spea_2509 - protein tyrosine phosphatase 2501 43.38 0 3058779..3059435 + 218 157962331 - Spea_2510 - nitroreductase 2502 42.12 0 3059563..3060438 - 291 157962332 - Spea_2511 - DNA ligase 2503 44.35 0 3060701..3061072 + 123 157962333 - Spea_2512 - diacylglycerol kinase 2504 42.50 0 3061478..3062350 + 290 157962334 - Spea_2513 - hypothetical protein 2505 45.42 0 3063013..3064038 + 341 157962335 - Spea_2514 - diguanylate cyclase 2506 44.93 0 3064166..3064855 - 229 157962336 - Spea_2515 - sortase family protein 2507 46.08 0 3064855..3067224 - 789 157962337 - Spea_2516 - cell wall anchor domain-containing protein 2508 48.80 +1 3067306..3068055 - 249 157962338 - Spea_2517 - OmpA/MotB domain-containing protein 2509 46.46 0 3068300..3068992 + 230 157962339 - Spea_2518 - two component transcriptional regulator 2510 47.83 0 3069089..3071275 + 728 157962340 - Spea_2519 - histidine kinase 2511 47.34 0 3071448..3072668 + 406 157962341 - Spea_2520 - cystathionine beta-lyase 2512 46.91 0 3072832..3073413 + 193 157962342 - Spea_2521 - hypothetical protein 2513 45.05 0 3073523..3074017 - 164 157962343 - Spea_2522 - CreA family protein 2514 48.98 +1 3074106..3075473 - 455 157962344 - Spea_2523 - putative chaperone 2515 44.72 0 3075633..3076616 - 327 157962345 - Spea_2524 - rhodanese domain-containing protein 2516 44.35 0 3076901..3077626 + 241 157962346 - Spea_2525 - glutathione S-transferase domain-containing protein 2517 46.53 0 3077683..3078288 - 201 157962347 - Spea_2526 - lysine exporter protein LysE/YggA 2518 46.35 0 3078453..3079820 + 455 157962348 - Spea_2527 - transcriptional regulator 2519 46.75 0 3079920..3080396 - 158 157962349 - Spea_2528 - 17 kDa surface antigen 2520 45.85 0 3080451..3081161 + 236 157962350 - Spea_2529 - leucyl/phenylalanyl-tRNA--protein transferase 2521 43.53 0 3081151..3081876 + 241 157962351 - Spea_2530 - arginyl-tRNA-protein transferase 2522 41.55 -1 3081991..3082209 + 72 157962352 - Spea_2531 - translation initiation factor IF-1 2523 47.72 0 3082342..3084600 - 752 157962353 - Spea_2532 - ATP-dependent Clp protease, ATP-binding subunit clpA 2524 37.86 -2 3084639..3084947 - 102 157962354 - Spea_2533 - ATP-dependent Clp protease adaptor protein ClpS 2525 45.89 0 3085187..3085393 + 68 157962355 - Spea_2534 - cold-shock DNA-binding domain-containing protein 2526 45.39 0 3085561..3087783 - 740 157962356 - Spea_2535 - isocitrate dehydrogenase, NADP-dependent 2527 43.95 0 3088087..3088821 + 244 157962357 - Spea_2536 - pseudouridine synthase 2528 42.83 0 3088832..3089284 + 150 157962358 - Spea_2537 - NUDIX hydrolase 2529 44.70 0 3089471..3090667 + 398 157962359 - Spea_2538 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0