version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2351 46.47 0 2876595..2877005 + 136 157962181 - Spea_2360 - lactoylglutathione lyase 2352 43.26 0 2877064..2879673 - 869 157962182 - Spea_2361 - TonB-dependent receptor 2353 45.86 0 2880551..2881564 - 337 157962183 - Spea_2362 - Holliday junction DNA helicase B 2354 43.69 0 2881574..2882191 - 205 157962184 - Spea_2363 - Holliday junction DNA helicase RuvA 2355 48.28 0 2882188..2882709 - 173 157962185 - Spea_2364 - crossover junction endodeoxyribonuclease RuvC 2356 47.31 0 2882717..2883460 - 247 157962186 - Spea_2365 - hypothetical protein 2357 45.99 0 2883590..2885383 - 597 157962187 - Spea_2366 - aspartyl-tRNA synthetase 2358 42.64 0 2885554..2888325 - 923 157962188 - Spea_2367 - diguanylate cyclase 2359 40.85 -1 2888514..2889245 + 243 157962189 - Spea_2368 - putative methyltransferase 2360 45.12 0 2889242..2890234 + 330 157962190 - Spea_2369 - putative methyltransferase 2361 43.52 0 2890258..2891013 + 251 157962191 - Spea_2370 - hypothetical protein 2362 43.67 0 2891025..2892533 + 502 157962192 - Spea_2371 - gonadoliberin III-related protein 2363 45.74 0 2892533..2893483 + 316 157962193 - Spea_2372 - alpha-L-glutamate ligase-like protein 2364 43.26 0 2893452..2895194 + 580 157962194 - Spea_2373 - peptidase M3A and M3B, thimet/oligopeptidase F 2365 44.29 0 2895139..2896233 + 364 157962195 - Spea_2374 - hypothetical protein 2366 36.51 -2 2896373..2898793 - 806 157962196 - Spea_2375 - histidine kinase 2367 46.18 0 2898952..2899200 - 82 157962197 - Spea_2376 - methyl-accepting chemotaxis protein 2368 42.70 0 2899423..2899785 + 120 157962198 - Spea_2377 - response regulator receiver protein 2369 47.34 0 2900354..2901460 - 368 157962199 - Spea_2378 - thiamine biosynthesis protein ThiH 2370 51.24 +1 2901488..2902252 - 254 157962200 - Spea_2379 - thiazole biosynthesis family protein 2371 44.02 0 2902254..2902487 - 77 157962201 - Spea_2380 - thiamine biosynthesis protein ThiS 2372 47.67 0 2902480..2903316 - 278 157962202 - Spea_2381 - UBA/THIF-type NAD/FAD binding protein 2373 47.71 0 2903306..2904898 - 530 157962203 - Spea_2382 - phosphomethylpyrimidine kinase 2374 47.75 0 2904901..2906904 - 667 157962204 - Spea_2383 - thiamine biosynthesis protein ThiC 2375 41.67 -1 2907380..2908291 - 303 157962205 - Spea_2384 - hypothetical protein 2376 41.07 -1 2908535..2909284 + 249 157962206 - Spea_2385 - hemolysin III family channel protein 2377 46.90 0 2909344..2909859 - 171 157962207 - Spea_2386 - DTW domain-containing protein 2378 43.70 0 2910137..2910628 - 163 157962208 - Spea_2387 - peptide deformylase 2379 46.81 0 2910896..2912617 + 573 157962209 - Spea_2388 - major facilitator transporter 2380 42.41 0 2912789..2913460 - 223 157962210 - Spea_2389 - hypothetical protein 2381 49.72 +1 2913671..2914024 + 117 157962211 - Spea_2390 - methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding 2382 45.80 0 2914046..2914831 + 261 157962212 - Spea_2391 - hypothetical protein 2383 44.27 0 2914909..2915694 - 261 157962213 - Spea_2392 - glutamine amidotransferase class-II 2384 47.39 0 2915939..2918386 + 815 157962214 - Spea_2393 - acyl-CoA dehydrogenase 2385 41.72 -1 2918541..2919827 - 428 157962215 - Spea_2394 - coproporphyrinogen dehydrogenase 2386 50.81 +1 2920216..2920587 - 123 157962216 - Spea_2395 - hypothetical protein 2387 45.87 0 2920584..2920958 - 124 157962217 - Spea_2396 - hypothetical protein 2388 43.70 0 2921392..2922684 - 430 157962218 - Spea_2397 - putative serine transporter 2389 38.91 -1 2923555..2925525 + 656 157962219 - Spea_2398 - methyl-accepting chemotaxis sensory transducer 2390 39.21 -1 2925949..2926629 - 226 157962220 - Spea_2399 - hypothetical protein 2391 46.22 0 2926979..2928856 - 625 157962221 - Spea_2400 - sodium/hydrogen exchanger 2392 44.57 0 2930138..2931472 - 444 157962222 - Spea_2401 - hypothetical protein 2393 44.58 0 2931483..2932211 - 242 157962223 - Spea_2402 - DNA polymerase III, epsilon subunit 2394 46.77 0 2932212..2932769 + 185 157962224 - Spea_2403 - ribonuclease H 2395 46.71 0 2932842..2933738 - 298 157962225 - Spea_2404 - LysR family transcriptional regulator 2396 45.75 0 2933747..2934487 - 246 157962226 - Spea_2405 - methyltransferase type 11 2397 43.43 0 2934626..2935417 + 263 157962227 - Spea_2406 - hydroxyacylglutathione hydrolase 2398 46.35 0 2935508..2937067 + 519 157962228 - Spea_2407 - lytic transglycosylase catalytic 2399 46.81 0 2937132..2937695 - 187 157962229 - Spea_2408 - intracellular proteinase inhibitor domain-containing protein 2400 43.77 0 2937695..2939533 - 612 157962230 - Spea_2409 - AsmA family protein 2401 42.37 0 2939618..2940115 - 165 157962231 - Spea_2410 - regulator of ribonuclease activity A 2402 33.33 -2 2940303..2940620 + 105 157962232 - Spea_2411 - hypothetical protein 2403 38.57 -2 2941156..2941785 - 209 157962233 - Spea_2412 - putative sulfite oxidase subunit YedZ 2404 44.48 0 2941830..2942852 - 340 157962234 - Spea_2413 - putative sulfite oxidase subunit YedY 2405 42.78 0 2943067..2944590 + 507 157962235 - Spea_2414 - hypothetical protein 2406 44.88 0 2944618..2946549 + 643 157962236 - Spea_2415 - lytic transglycosylase catalytic 2407 47.37 0 2946946..2947857 + 303 157962237 - Spea_2416 - ATPase 2408 46.02 0 2947930..2948946 + 338 157962238 - Spea_2417 - hypothetical protein 2409 47.83 0 2948943..2951012 + 689 157962239 - Spea_2418 - transglutaminase domain-containing protein 2410 48.16 0 2951072..2954881 + 1269 157962240 - Spea_2419 - exodeoxyribonuclease V, gamma subunit 2411 47.97 0 2954883..2958599 + 1238 157962241 - Spea_2420 - exodeoxyribonuclease V, beta subunit 2412 48.02 0 2958596..2960590 + 664 157962242 - Spea_2421 - exodeoxyribonuclease V, alpha subunit 2413 44.08 0 2960862..2961866 + 334 157962243 - Spea_2422 - D-alanyl-alanine synthetase A 2414 39.71 -1 2961950..2962702 - 250 157962244 - Spea_2423 - integrase catalytic region 2415 41.60 -1 2962786..2963184 - 132 157962245 - Spea_2424 - transposase 2416 46.00 0 2963294..2963893 - 199 157962246 - Spea_2425 - NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome 2417 46.09 0 2963902..2964387 - 161 157962247 - Spea_2426 - nitrate reductase cytochrome c-type subunit (NapB) 2418 47.95 0 2964400..2966889 - 829 157962248 - Spea_2427 - nitrate reductase 2419 40.70 -1 2966892..2967149 - 85 157962249 - Spea_2428 - NapD family protein 2420 41.51 -1 2967190..2967348 - 52 157962250 - Spea_2429 - periplasmic nitrate reductase NapE 2421 46.42 0 2968293..2972180 - 1295 157962251 - Spea_2430 - ATP-dependent helicase HrpA 2422 46.76 0 2972383..2972799 - 138 157962252 - Spea_2431 - signal transduction protein 2423 35.49 -2 2972942..2973544 - 200 157962253 - Spea_2432 - hypothetical protein 2424 44.30 0 2973836..2974291 - 151 157962254 - Spea_2433 - xanthine-guanine phosphoribosyltransferase 2425 43.07 0 2974579..2974917 - 112 157962255 - Spea_2434 - hypothetical protein 2426 47.05 0 2975127..2976212 - 361 157962256 - Spea_2435 - asparaginase 2427 43.84 0 2976381..2978207 + 608 157962257 - Spea_2436 - surface antigen (D15) 2428 45.62 0 2978204..2982265 + 1353 157962258 - Spea_2437 - hypothetical protein 2429 42.78 0 2982409..2983128 - 239 157962259 - Spea_2438 - fatty acid metabolism regulator 2430 43.35 0 2983416..2985002 + 528 157962260 - Spea_2439 - sodium/proton antiporter 2431 47.40 0 2985081..2985599 + 172 157962261 - Spea_2440 - disulphide bond formation protein DsbB 2432 43.54 0 2985663..2986103 - 146 157962262 - Spea_2441 - hypothetical protein 2433 43.88 0 2986307..2987302 - 331 157962263 - Spea_2442 - lytic murein transglycosylase 2434 37.94 -2 2987344..2987625 - 93 157962264 - Spea_2443 - hypothetical protein 2435 44.87 0 2987700..2988410 + 236 157962265 - Spea_2444 - septum site-determining protein MinC 2436 43.46 0 2988442..2989251 + 269 157962266 - Spea_2445 - septum site-determining protein MinD 2437 45.59 0 2989255..2989515 + 86 157962267 - Spea_2446 - cell division topological specificity factor MinE 2438 41.08 -1 2989575..2990684 - 369 157962268 - Spea_2447 - ribonuclease D 2439 44.48 0 2990779..2992446 - 555 157962269 - Spea_2448 - long-chain-fatty-acid--CoA ligase 2440 44.52 0 2992633..2993508 - 291 157962270 - Spea_2449 - alpha/beta hydrolase fold 2441 43.80 0 2993517..2994347 - 276 157962271 - Spea_2450 - hypothetical protein 2442 47.20 0 2994423..2995136 - 237 157962272 - Spea_2451 - hypothetical protein 2443 45.31 0 2995129..2995437 - 102 157962273 - Spea_2452 - hypothetical protein 2444 48.54 +1 2995486..2996202 - 238 157962274 - Spea_2453 - peptidase M22 glycoprotease 2445 38.73 -1 2996567..2996992 + 141 157962275 - Spea_2454 - hypothetical protein 2446 45.33 0 2996985..2998910 - 641 157962276 - Spea_2455 - helicase c2 2447 44.78 0 2999471..3000370 + 299 157962277 - Spea_2456 - ATP phosphoribosyltransferase 2448 49.51 +1 3000375..3001703 + 442 157962278 - Spea_2457 - histidinol dehydrogenase 2449 46.78 0 3001700..3002755 + 351 157962279 - Spea_2458 - histidinol-phosphate aminotransferase 2450 46.76 0 3002843..3003937 + 364 157962280 - Spea_2459 - imidazole glycerol-phosphate dehydratase/histidinol phosphatase 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0