IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2280	 46.70	0	2773448..2774098	-	216	157962110	-	Spea_2289	-	hexapaptide repeat-containing transferase
2281	 39.98	-1	2774152..2775009	-	285	157962111	-	Spea_2290	-	phospholipase A1
2282	 45.47	0	2775396..2777381	-	661	157962112	-	Spea_2291	-	excinuclease ABC subunit B
2283	 46.00	0	2777679..2780669	-	996	157962113	-	Spea_2292	-	UvrD/REP helicase
2284	 40.17	-1	2781046..2781396	+	116	157962114	-	Spea_2293	-	hypothetical protein
2285	 44.41	0	2781639..2782721	+	360	157962115	-	Spea_2294	-	hypothetical protein
2286	 48.86	+1	2782955..2784538	+	527	157962116	-	Spea_2295	-	glutathione synthase
2287	 45.78	0	2784744..2787185	-	813	157962117	-	Spea_2296	-	hypothetical protein
2288	 44.60	0	2787185..2787814	-	209	157962118	-	Spea_2297	-	hypothetical protein
2289	 44.79	0	2787978..2791259	+	1093	157962119	-	Spea_2298	-	histidine kinase
2290	 44.74	0	2791252..2791917	+	221	157962120	-	Spea_2299	-	two component LuxR family transcriptional regulator
2291	 48.