version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1946 42.17 0 2376525..2377169 + 214 157961776 - Spea_1953 - response regulator 1947 44.21 0 2377189..2379018 + 609 157961777 - Spea_1954 - excinuclease ABC subunit C 1948 42.99 0 2379066..2379614 + 182 157961778 - Spea_1955 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1949 41.93 0 2380631..2381200 + 189 157961779 - Spea_1956 - hypothetical protein 1950 43.58 0 2381364..2382719 + 451 157961780 - Spea_1957 - peptidoglycan binding domain-containing protein 1951 42.99 0 2382849..2383397 + 182 157961781 - Spea_1958 - hypothetical protein 1952 42.71 0 2383547..2383834 + 95 157961782 - Spea_1959 - ribosomal protein L25 1953 41.19 -1 2383910..2385424 - 504 157961783 - Spea_1960 - hypothetical protein 1954 42.40 0 2385434..2386702 - 422 157961784 - Spea_1961 - hypothetical protein 1955 42.53 0 2386754..2388688 - 644 157961785 - Spea_1962 - putative serine protein kinase, PrkA 1956 42.91 0 2388916..2389500 - 194 157961786 - Spea_1963 - superoxide dismutase 1957 43.57 0 2389726..2390067 + 113 157961787 - Spea_1964 - glutaredoxin-like protein 1958 45.35 0 2390178..2391434 - 418 157961788 - Spea_1965 - uracil-xanthine permease 1959 41.42 -1 2391611..2392723 + 370 157961789 - Spea_1966 - hypothetical protein 1960 43.88 0 2392797..2393507 + 236 157961790 - Spea_1967 - DNA replication initiation factor 1961 44.58 0 2393609..2395546 - 645 157961791 - Spea_1968 - hypothetical protein 1962 44.09 0 2395719..2396090 - 123 157961792 - Spea_1969 - hypothetical protein 1963 37.04 -2 2396103..2396453 - 116 157961793 - Spea_1970 - arsenate reductase 1964 42.09 0 2396527..2397987 - 486 157961794 - Spea_1971 - peptidase M48 Ste24p 1965 39.81 -1 2398099..2398314 + 71 157961795 - Spea_1972 - SirA family protein 1966 43.06 0 2398405..2399514 + 369 157961796 - Spea_1973 - hypothetical protein 1967 44.00 0 2400010..2400900 - 296 157961797 - Spea_1974 - chromosome replication initiation inhibitor protein 1968 40.49 -1 2401029..2401643 + 204 157961798 - Spea_1975 - lysine exporter protein LysE/YggA 1969 41.41 -1 2401724..2402107 + 127 157961799 - Spea_1976 - transposase 1970 43.62 0 2402224..2402952 + 242 157961800 - Spea_1977 - integrase catalytic region 1971 43.52 0 2402985..2403455 - 156 157961801 - Spea_1978 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 1972 43.39 0 2403476..2404012 - 178 157961802 - Spea_1979 - amino acid-binding ACT domain-containing protein 1973 44.75 0 2404254..2405138 + 294 157961803 - Spea_1980 - dihydrodipicolinate synthase 1974 41.44 -1 2405142..2406239 + 365 157961804 - Spea_1981 - NlpB/DapX family lipoprotein 1975 45.15 0 2406610..2407692 + 360 157961805 - Spea_1982 - RND family efflux transporter MFP subunit 1976 46.31 0 2407689..2410793 + 1034 157961806 - Spea_1983 - acriflavin resistance protein 1977 40.42 -1 2410860..2411099 - 79 157961807 - Spea_1984 - hypothetical protein 1978 43.36 0 2411113..2411850 - 245 157961808 - Spea_1985 - 3-deoxy-manno-octulosonate cytidylyltransferase 1979 42.44 0 2412852..2413466 - 204 157961809 - Spea_1988 - carbonate dehydratase 1980 43.74 0 2413711..2414565 - 284 157961810 - Spea_1989 - alpha/beta hydrolase fold 1981 42.31 0 2414614..2415192 - 192 157961811 - Spea_1990 - peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 1982 47.12 0 2415285..2416430 - 381 157961812 - Spea_1991 - succinyl-diaminopimelate desuccinylase 1983 42.78 0 2416427..2416807 - 126 157961813 - Spea_1992 - arsenate reductase and related 1984 43.73 0 2416942..2417451 - 169 157961814 - Spea_1993 - glucose-specific PTS system component 1985 42.90 0 2417516..2419219 - 567 157961815 - Spea_1994 - phosphoenolpyruvate-protein phosphotransferase 1986 44.69 0 2419230..2419502 - 90 157961816 - Spea_1995 - phosphotransferase system, phosphocarrier protein HPr 1987 41.09 -1 2419567..2419953 - 128 157961817 - Spea_1996 - hypothetical protein 1988 45.40 0 2420055..2421695 - 546 157961818 - Spea_1997 - methyl-accepting chemotaxis sensory transducer 1989 40.43 -1 2422060..2422764 + 234 157961819 - Spea_1998 - hypothetical protein 1990 44.91 0 2422912..2423559 - 215 157961820 - Spea_1999 - DNA polymerase III, epsilon subunit 1991 45.90 0 2423747..2424892 + 381 157961821 - Spea_2000 - cupin 4 family protein 1992 45.57 0 2425066..2425956 - 296 157961822 - Spea_2001 - hypothetical protein 1993 39.57 -1 2426244..2426756 + 170 157961823 - Spea_2002 - GreA/GreB family elongation factor 1994 47.22 0 2426831..2427190 + 119 157961824 - Spea_2003 - hypothetical protein 1995 46.29 0 2427291..2428826 - 511 157961825 - Spea_2004 - XRE family transcriptional regulator 1996 39.92 -1 2428976..2429491 + 171 157961826 - Spea_2005 - malate synthase 1997 44.83 0 2429824..2431041 + 405 157961827 - Spea_2006 - Fmu (Sun) domain-containing protein 1998 38.36 -2 2431160..2433208 - 682 157961828 - Spea_2007 - sulfatase 1999 38.39 -2 2433784..2435088 + 434 157961829 - Spea_2008 - peptidoglycan binding domain-containing protein 2000 36.82 -2 2435098..2435499 + 133 157961830 - Spea_2009 - transposase and inactivated derivative 2001 37.21 -2 2436305..2436871 + 188 157961831 - Spea_2010 - peptidase A24A prepilin type IV 2002 40.59 -1 2436882..2438204 + 440 157961832 - Spea_2011 - AAA ATPase 2003 40.54 -1 2438231..2439049 + 272 157961833 - Spea_2012 - SAF domain-containing protein 2004 40.78 -1 2439095..2440531 + 478 157961834 - Spea_2013 - type II and III secretion system protein 2005 39.84 -1 2440615..2440860 + 81 157961835 - Spea_2014 - hypothetical protein 2006 40.88 -1 2440901..2442238 + 445 157961836 - Spea_2015 - hypothetical protein 2007 38.51 -2 2442249..2442731 + 160 157961837 - Spea_2016 - TadE family protein 2008 38.82 -1 2442728..2443183 + 151 157961838 - Spea_2017 - TadE family protein 2009 36.19 -2 2443277..2444503 + 408 157961839 - Spea_2018 - Flp pilus assembly protein ATPase CpaE-like protein 2010 42.36 0 2444505..2445833 + 442 157961840 - Spea_2019 - type II secretion system protein E 2011 41.41 -1 2445845..2446822 + 325 157961841 - Spea_2020 - type II secretion system protein 2012 41.02 -1 2446824..2447786 + 320 157961842 - Spea_2021 - type II secretion system protein 2013 41.76 -1 2447811..2448866 + 351 157961843 - Spea_2022 - TPR repeat-containing protein 2014 43.10 0 2448962..2449309 - 115 157961844 - Spea_2023 - hydrogenase expression/synthesis HypA 2015 44.84 0 2449309..2450325 - 338 157961845 - Spea_2024 - hydrogenase expression/formation protein HypE 2016 45.84 0 2450325..2451443 - 372 157961846 - Spea_2025 - hydrogenase expression/formation protein HypD 2017 41.77 -1 2451443..2451691 - 82 157961847 - Spea_2026 - hydrogenase assembly chaperone hypC/hupF 2018 42.39 0 2451691..2452452 - 253 157961848 - Spea_2027 - hydrogenase accessory protein HypB 2019 44.53 0 2452552..2454954 - 800 157961849 - Spea_2028 - (NiFe) hydrogenase maturation protein HypF 2020 42.23 0 2454973..2456736 - 587 157961850 - Spea_2029 - hypothetical protein 2021 45.34 0 2456723..2457280 - 185 157961851 - Spea_2030 - hydrogenase expression/formation protein 2022 42.75 0 2457290..2457958 - 222 157961852 - Spea_2031 - Ni/Fe-hydrogenase, b-type cytochrome subunit 2023 47.01 0 2457973..2459676 - 567 157961853 - Spea_2032 - nickel-dependent hydrogenase large subunit 2024 49.52 +1 2459679..2460815 - 378 157961854 - Spea_2033 - hydrogenase (NiFe) small subunit HydA 2025 45.40 0 2461238..2462638 - 466 157961855 - Spea_2034 - asparaginyl-tRNA synthetase 2026 45.14 0 2462838..2463125 + 95 157961856 - Spea_2035 - hypothetical protein 2027 45.12 0 2463164..2463757 - 197 157961857 - Spea_2036 - NUDIX hydrolase 2028 45.21 0 2463805..2465277 - 490 157961858 - Spea_2037 - para-aminobenzoate synthase, subunit I 2029 48.59 +1 2465456..2466976 + 506 157961859 - Spea_2038 - tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit 2030 45.61 0 2467255..2469306 + 683 157961860 - Spea_2039 - peptidase S9 prolyl oligopeptidase 2031 42.68 0 2469484..2470050 - 188 157961861 - Spea_2040 - hypothetical protein 2032 44.57 0 2470491..2472074 - 527 157961862 - Spea_2041 - isocitrate lyase 2033 45.82 0 2472185..2473129 + 314 157961863 - Spea_2042 - LysR family transcriptional regulator 2034 45.70 0 2473349..2475523 + 724 157961864 - Spea_2043 - malate synthase G 2035 46.22 0 2475595..2478210 - 871 157961865 - Spea_2044 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2036 40.54 -1 2478541..2479164 + 207 157961866 - Spea_2045 - hypothetical protein 2037 44.64 0 2479241..2480575 - 444 157961867 - Spea_2046 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 2038 42.35 0 2480594..2481181 - 195 157961868 - Spea_2047 - hypothetical protein 2039 43.21 0 2481285..2482499 - 404 157961869 - Spea_2048 - aminotransferase AlaT 2040 42.07 0 2482835..2483395 - 186 157961870 - Spea_2049 - elongation factor P 2041 41.32 -1 2483440..2484654 - 404 157961871 - Spea_2050 - hypothetical protein 2042 44.70 0 2484779..2485306 - 175 157961872 - Spea_2051 - flavodoxin FldA 2043 42.49 0 2485363..2485635 - 90 157961873 - Spea_2052 - LexA regulated protein 2044 42.79 0 2485647..2485868 - 73 157961874 - Spea_2053 - hypothetical protein 2045 44.01 0 2485965..2486723 - 252 157961875 - Spea_2054 - alpha/beta hydrolase fold 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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