IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1938	 39.27	-1	2365103..2365708	-	201	157961768	-	Spea_1945	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1939	 42.04	0	2366975..2369110	+	711	157961769	-	Spea_1946	-	23S rRNA m(2)G2445 methyltransferase
1940	 40.51	-1	2369100..2369336	+	78	157961770	-	Spea_1947	-	glutaredoxin 2
1941	 44.07	0	2369338..2371275	+	645	157961771	-	Spea_1948	-	ABC transporter ATPase component
1942	 41.52	-1	2371305..2373161	+	618	157961772	-	Spea_1949	-	hypothetical protein
1943	 41.24	-1	2373357..2373533	+	58	157961773	-	Spea_1950	-	ribosome modulation factor
1944	 43.99	0	2373668..2374183	-	171	157961774	-	Spea_1951	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1945	 43.90	0	2374251..2375963	-	570	157961775	-	Spea_1952	-	peptidase S16 lon domain-containing protein
1946	 42.17	0	2376525..2377169	+	214	157961776	-	Spea_1953	-	response regulator
1947	 44.21	0	2377189..2379018	+	609	157961777	-	Spea_1954	-	excinuclease ABC subunit C
1948	 42.99	0	2379066..2379614	+	182