IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1919	 43.73	0	2335962..2336750	+	262	157961749	-	Spea_1926	-	TatD family hydrolase
1920	 44.38	0	2336976..2338442	-	488	157961750	-	Spea_1927	-	rRNA (cytosine-C(5)-)-methyltransferase RsmF
1921	 45.56	0	2338532..2339758	+	408	157961751	-	Spea_1928	-	nucleoside recognition domain-containing protein
1922	 43.98	0	2339909..2342539	-	876	157961752	-	Spea_1929	-	hypothetical protein
1923	 42.83	0	2342517..2343158	-	213	157961753	-	Spea_1930	-	paraquat-inducible protein A
1924	 42.06	0	2343148..2343777	-	209	157961754	-	Spea_1931	-	paraquat-inducible protein A
1925	 37.46	-2	2343962..2344252	+	96	157961755	-	Spea_1932	-	YebG family protein
1926	 41.39	-1	2344337..2344795	+	152	157961756	-	Spea_1933	-	putative GAF sensor protein
1927	 42.41	0	2345083..2345721	+	212	157961757	-	Spea_1934	-	putative solute/DNA competence effector
1928	 42.77	0	2345755..2347800	+	681	157961758	-	Spea_1935	-	carboxy-terminal protease
1929	 41.69	-1	2347873..2350434	+	853	15796175