version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1853 52.54 +2 2263272..2263901 + 209 157961683 - Spea_1859 - XRE family transcriptional regulator 1854 47.56 0 2264244..2265818 + 524 157961684 - Spea_1860 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1855 46.71 0 2266076..2267017 - 313 157961685 - Spea_1861 - transporter DMT superfamily protein 1856 45.88 0 2268123..2270522 + 799 157961686 - Spea_1862 - TonB-dependent receptor plug 1857 48.92 +1 2270984..2271952 - 322 157961687 - Spea_1863 - ribonucleoside hydrolase 1 1858 49.56 +1 2272206..2274005 - 599 157961688 - Spea_1864 - gamma-glutamyltransferase 1859 42.18 0 2274200..2275420 + 406 157961689 - Spea_1865 - hypothetical protein 1860 44.95 0 2275491..2275817 - 108 157961690 - Spea_1866 - hypothetical protein 1861 43.15 0 2275913..2276248 - 111 157961691 - Spea_1867 - hypothetical protein 1862 39.15 -1 2276507..2276884 - 125 157961692 - Spea_1868 - hypothetical protein 1863 47.18 0 2276940..2277560 - 206 157961693 - Spea_1869 - lysine exporter protein LysE/YggA 1864 35.78 -2 2278702..2279517 + 271 157961694 - Spea_1870 - hypothetical protein 1865 35.87 -2 2279689..2281341 + 550 157961695 - Spea_1871 - hypothetical protein 1866 33.96 -2 2281416..2283173 + 585 157961696 - Spea_1872 - hypothetical protein 1867 43.32 0 2283981..2285021 - 346 157961697 - Spea_1873 - 4-hydroxyphenylpyruvate dioxygenase 1868 46.60 0 2285111..2286271 - 386 157961698 - Spea_1874 - homogentisate 12-dioxygenase 1869 46.11 0 2286427..2287326 + 299 157961699 - Spea_1875 - LysR family transcriptional regulator 1870 41.67 -1 2287728..2288087 + 119 157961700 - Spea_1876 - hypothetical protein 1871 46.63 0 2288240..2289232 - 330 157961701 - Spea_1877 - cytochrome-c peroxidase 1872 42.86 0 2289486..2289716 - 76 157961702 - Spea_1878 - integral membrane protein TerC 1873 44.32 0 2289976..2290767 + 263 157961703 - Spea_1879 - ABC transporter 1874 43.57 0 2290918..2291757 + 279 157961704 - Spea_1880 - alpha/beta hydrolase fold 1875 44.85 0 2291767..2292174 - 135 157961705 - Spea_1881 - hypothetical protein 1876 43.36 0 2292552..2293469 + 305 157961706 - Spea_1882 - hypothetical protein 1877 47.22 0 2293491..2293634 + 47 157961707 - Spea_1883 - hypothetical protein 1878 35.06 -2 2294204..2294377 - 57 157961708 - Spea_1884 - hypothetical protein 1879 43.43 0 2294882..2295772 + 296 157961709 - Spea_1885 - MscS mechanosensitive ion channel 1880 38.42 -2 2296140..2296709 - 189 157961710 - Spea_1886 - hypothetical protein 1881 35.02 -2 2296792..2297622 - 276 157961711 - Spea_1887 - phage exclusion protein Lit 1882 38.19 -2 2297800..2298582 - 260 157961712 - Spea_1888 - hypothetical protein 1883 41.08 -1 2298749..2299174 - 141 157961713 - Spea_1890 - hypothetical protein 1884 40.10 -1 2299645..2299851 - 68 157961714 - Spea_1891 - XRE family transcriptional regulator 1885 38.70 -1 2299980..2300519 + 179 157961715 - Spea_1892 - hypothetical protein 1886 38.20 -2 2300525..2301943 + 472 157961716 - Spea_1893 - type III restriction protein res subunit 1887 38.01 -2 2302098..2302910 - 270 157961717 - Spea_1894 - hypothetical protein 1888 40.50 -1 2303250..2303528 - 92 157961718 - Spea_1895 - hypothetical protein 1889 39.58 -1 2304868..2305251 - 127 157961719 - Spea_1896 - hypothetical protein 1890 40.97 -1 2305253..2307295 - 680 157961720 - Spea_1897 - integrase family protein 1891 39.39 -1 2307295..2309985 - 896 157961721 - Spea_1898 - hypothetical protein 1892 40.58 -1 2309986..2311365 - 459 157961722 - Spea_1899 - integrase family protein 1893 44.12 0 2311491..2312213 + 240 157961723 - Spea_1900 - MscS mechanosensitive ion channel 1894 43.81 0 2312303..2313247 + 314 157961724 - Spea_1901 - response regulator receiver modulated CheW protein 1895 41.40 -1 2313309..2313953 - 214 157961725 - Spea_1902 - hypothetical protein 1896 45.00 0 2314040..2314399 - 119 157961726 - Spea_1903 - hypothetical protein 1897 47.94 0 2314764..2315954 + 396 157961727 - Spea_1904 - lytic murein transglycosylase 1898 46.38 0 2316083..2316565 + 160 157961728 - Spea_1905 - peptidylprolyl isomerase FKBP-type 1899 41.10 -1 2316639..2316857 + 72 157961729 - Spea_1906 - hypothetical protein 1900 46.84 0 2316970..2317650 + 226 157961730 - Spea_1907 - carboxylesterase 1901 42.99 0 2318021..2319739 + 572 157961731 - Spea_1908 - bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 1902 43.31 0 2320035..2320475 + 146 157961732 - Spea_1909 - heat shock protein Hsp20 1903 45.25 0 2320555..2321049 - 164 157961733 - Spea_1910 - acetolactate synthase, small subunit 1904 46.40 0 2321049..2322770 - 573 157961734 - Spea_1911 - acetolactate synthase, large subunit, biosynthetic type 1905 46.05 0 2323131..2324357 - 408 157961735 - Spea_1912 - Bcr/CflA subfamily drug resistance transporter 1906 47.25 0 2325153..2325497 - 114 157961736 - Spea_1913 - hypothetical protein 1907 44.22 0 2325746..2326498 + 250 157961737 - Spea_1914 - hypothetical protein 1908 41.60 -1 2326597..2326995 + 132 157961738 - Spea_1915 - transposase 1909 39.71 -1 2327079..2327831 + 250 157961739 - Spea_1916 - integrase catalytic region 1910 45.20 0 2327899..2329938 - 679 157961740 - Spea_1917 - methionyl-tRNA synthetase 1911 45.88 0 2330099..2331214 + 371 157961741 - Spea_1918 - ATP-binding Mrp/Nbp35 family protein 1912 45.13 0 2331226..2331861 + 211 157961742 - Spea_1919 - uridine kinase 1913 44.14 0 2331896..2332117 + 73 157961743 - Spea_1920 - deoxycytidine triphosphate deaminase 1914 44.96 0 2332117..2333019 + 300 157961744 - Spea_1921 - aminodeoxychorismate lyase 1915 44.35 0 2333016..2334023 + 335 157961745 - Spea_1922 - aminodeoxychorismate lyase 1916 48.06 0 2334020..2334664 + 214 157961746 - Spea_1923 - dTMP kinase 1917 45.10 0 2334666..2335583 + 305 157961747 - Spea_1924 - DNA polymerase III, delta prime subunit 1918 45.26 0 2335590..2335916 + 108 157961748 - Spea_1925 - type IV pilus biogenesis protein PilZ 1919 43.73 0 2335962..2336750 + 262 157961749 - Spea_1926 - TatD family hydrolase 1920 44.38 0 2336976..2338442 - 488 157961750 - Spea_1927 - rRNA (cytosine-C(5)-)-methyltransferase RsmF 1921 45.56 0 2338532..2339758 + 408 157961751 - Spea_1928 - nucleoside recognition domain-containing protein 1922 43.98 0 2339909..2342539 - 876 157961752 - Spea_1929 - hypothetical protein 1923 42.83 0 2342517..2343158 - 213 157961753 - Spea_1930 - paraquat-inducible protein A 1924 42.06 0 2343148..2343777 - 209 157961754 - Spea_1931 - paraquat-inducible protein A 1925 37.46 -2 2343962..2344252 + 96 157961755 - Spea_1932 - YebG family protein 1926 41.39 -1 2344337..2344795 + 152 157961756 - Spea_1933 - putative GAF sensor protein 1927 42.41 0 2345083..2345721 + 212 157961757 - Spea_1934 - putative solute/DNA competence effector 1928 42.77 0 2345755..2347800 + 681 157961758 - Spea_1935 - carboxy-terminal protease 1929 41.69 -1 2347873..2350434 + 853 157961759 - Spea_1936 - aminopeptidase N 1930 39.83 -1 2350522..2350752 + 76 157961760 - Spea_1937 - hypothetical protein 1931 44.85 0 2351070..2353118 + 682 157961761 - Spea_1938 - hypothetical protein 1932 44.69 0 2353138..2354502 + 454 157961762 - Spea_1939 - hypothetical protein 1933 40.81 -1 2354556..2355572 + 338 157961763 - Spea_1940 - BNR repeat-containing protein 1934 43.45 0 2355585..2357888 + 767 157961764 - Spea_1941 - Patched family protein 1935 43.03 0 2358150..2362994 + 1614 157961765 - Spea_1942 - NAD-glutamate dehydrogenase 1936 39.61 -1 2363054..2364073 + 339 157961766 - Spea_1943 - dihydroorotate dehydrogenase 2 1937 38.89 -1 2364247..2364786 + 179 157961767 - Spea_1944 - hypothetical protein 1938 39.27 -1 2365103..2365708 - 201 157961768 - Spea_1945 - peptidyl-prolyl cis-trans isomerase cyclophilin type 1939 42.04 0 2366975..2369110 + 711 157961769 - Spea_1946 - 23S rRNA m(2)G2445 methyltransferase 1940 40.51 -1 2369100..2369336 + 78 157961770 - Spea_1947 - glutaredoxin 2 1941 44.07 0 2369338..2371275 + 645 157961771 - Spea_1948 - ABC transporter ATPase component 1942 41.52 -1 2371305..2373161 + 618 157961772 - Spea_1949 - hypothetical protein 1943 41.24 -1 2373357..2373533 + 58 157961773 - Spea_1950 - ribosome modulation factor 1944 43.99 0 2373668..2374183 - 171 157961774 - Spea_1951 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 1945 43.90 0 2374251..2375963 - 570 157961775 - Spea_1952 - peptidase S16 lon domain-containing protein 1946 42.17 0 2376525..2377169 + 214 157961776 - Spea_1953 - response regulator 1947 44.21 0 2377189..2379018 + 609 157961777 - Spea_1954 - excinuclease ABC subunit C 1948 42.99 0 2379066..2379614 + 182 157961778 - Spea_1955 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1949 41.93 0 2380631..2381200 + 189 157961779 - Spea_1956 - hypothetical protein 1950 43.58 0 2381364..2382719 + 451 157961780 - Spea_1957 - peptidoglycan binding domain-containing protein 1951 42.99 0 2382849..2383397 + 182 157961781 - Spea_1958 - hypothetical protein 1952 42.71 0 2383547..2383834 + 95 157961782 - Spea_1959 - ribosomal protein L25 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0