IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1851	 46.53	0	2257913..2260102	-	729	157961681	-	Spea_1857	-	peptidyl-dipeptidase Dcp
1852	 49.58	+1	2260562..2262001	-	479	157961682	-	Spea_1858	-	hypothetical protein
1853	 52.54	+2	2263272..2263901	+	209	157961683	-	Spea_1859	-	XRE family transcriptional regulator
1854	 47.56	0	2264244..2265818	+	524	157961684	-	Spea_1860	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1855	 46.71	0	2266076..2267017	-	313	157961685	-	Spea_1861	-	transporter DMT superfamily protein
1856	 45.88	0	2268123..2270522	+	799	157961686	-	Spea_1862	-	TonB-dependent receptor plug
1857	 48.92	+1	2270984..2271952	-	322	157961687	-	Spea_1863	-	ribonucleoside hydrolase 1
1858	 49.56	+1	2272206..2274005	-	599	157961688	-	Spea_1864	-	gamma-glutamyltransferase
1859	 42.18	0	2274200..2275420	+	406	157961689	-	Spea_1865	-	hypothetical protein
1860	 44.95	0	2275491..2275817	-	108	157961690	-	Spea_1866	-	hypothetical protein
1861	 43.15	0	2275913..2276248	-	111	15796