IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1276	 35.33	-2	1563144..1563494	-	116	157961106	-	Spea_1278	-	hypothetical protein
1277	 37.25	-2	1563727..1564083	-	118	157961107	-	Spea_1279	-	XRE family transcriptional regulator
1278	 38.99	-1	1564202..1564696	+	164	157961108	-	Spea_1280	-	hypothetical protein
1279	 46.39	0	1564741..1565973	-	410	157961109	-	Spea_1281	-	integrase family protein
1280	 42.42	0	1566605..1567099	-	164	157961110	-	Spea_1282	-	SsrA-binding protein
1281	 43.52	0	1567293..1567724	+	143	157961111	-	Spea_1283	-	cyclase/dehydrase
1282	 44.14	0	1567721..1568053	+	110	157961112	-	Spea_1284	-	hypothetical protein
1283	 41.62	-1	1568161..1568655	-	164	157961113	-	Spea_1285	-	SmpA/OmlA domain-containing protein
1284	 48.26	0	1569121..1569924	+	267	157961114	-	Spea_1286	-	uroporphyrin-III C/tetrapyrrole methyltransferase
1285	 48.48	+1	1570060..1570224	+	54	157961115	-	Spea_1287	-	hypothetical protein
1286	 39.91	-1	1570480..1570692	+	70	157961116	-	Spea_1288	-	hypothetical pro