IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
84	 46.02	0	94286..94624	-	112	157959914	-	Spea_0084	-	flagellar hook-basal body complex subunit FliE
85	 48.55	+1	94655..95962	-	435	157959915	-	Spea_0085	-	sigma-54 dependent trancsriptional regulator
86	 47.26	0	95949..96860	-	303	157959916	-	Spea_0086	-	OmpA/MotB domain-containing protein
87	 45.69	0	97405..98286	+	293	157959917	-	Spea_0087	-	hypothetical protein
88	 43.70	0	98279..98635	+	118	157959918	-	Spea_0088	-	flagellar motor switch protein FliN
89	 45.82	0	98638..99366	+	242	157959919	-	Spea_0089	-	flagellar biosynthesis protein FliP
90	 46.30	0	99553..99822	+	89	157959920	-	Spea_0090	-	flagellar biosynthetic protein FliQ
91	 46.92	0	99901..100680	+	259	157959921	-	Spea_0091	-	flagellar biosynthetic protein FliR
92	 46.95	0	100677..101807	+	376	157959922	-	Spea_0092	-	flagellar biosynthetic protein FlhB
93	 49.86	+1	101823..103904	+	693	157959923	-	Spea_0093	-	flagellar biosynthesis protein FlhA
94	 49.54	+1	103963..104937	-	324	157959924	-	Spea_0094	-	alpha