IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1220	 46.65	0	1486448..1488091	-	547	157961050	-	Spea_1222	-	PepSY-associated TM helix domain-containing protein
1221	 46.15	0	1488095..1488406	-	103	157961051	-	Spea_1223	-	hypothetical protein
1222	 42.58	0	1488993..1489349	+	118	157961052	-	Spea_1224	-	sigma 54 modulation protein/ribosomal protein S30EA
1223	 48.42	0	1489454..1491382	-	642	157961053	-	Spea_1225	-	potassium efflux system protein
1224	 47.18	0	1491385..1492005	-	206	157961054	-	Spea_1226	-	NAD(P)H dehydrogenase (quinone)
1225	 47.03	0	1492366..1493577	+	403	157961055	-	Spea_1227	-	NnrS family protein
1226	 48.87	+1	1493670..1495079	+	469	157961056	-	Spea_1228	-	nitrite reductase (cytochrome; ammonia-forming)
1227	 41.72	-1	1495344..1495832	+	162	157961057	-	Spea_1229	-	hypothetical protein
1228	 48.34	0	1495878..1496930	+	350	157961058	-	Spea_1230	-	AraC family transcriptional regulator
1229	 48.78	+1	1497064..1499076	+	670	157961059	-	Spea_1231	-	beta-lactamase domain-containing protein
1230	 33.58	-2	1499742..1500542	-	266