IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1188	 45.29	0	1444116..1444868	+	250	157961018	-	Spea_1190	-	stationary-phase survival protein SurE
1189	 47.48	0	1445346..1445981	+	211	157961019	-	Spea_1191	-	protein-L-isoaspartate O-methyltransferase
1190	 41.86	-1	1446069..1446959	+	296	157961020	-	Spea_1192	-	peptidase M23B
1191	 42.52	0	1447036..1448004	+	322	157961021	-	Spea_1193	-	RpoD family RNA polymerase sigma factor
1192	 48.64	+1	1448117..1450696	-	859	157961022	-	Spea_1194	-	DNA mismatch repair protein
1193	 45.22	0	1451017..1452084	+	355	157961023	-	Spea_1195	-	recombinase A
1194	 45.62	0	1452516..1455143	+	875	157961024	-	Spea_1196	-	alanyl-tRNA synthetase
1195	 41.41	-1	1455613..1455810	+	65	157961025	-	Spea_1197	-	carbon storage regulator, CsrA
1196	 44.31	0	1458872..1459117	+	81	157961026	-	Spea_1198	-	sodium pump decarboxylase, gamma subunit
1197	 47.02	0	1459138..1460949	+	603	157961027	-	Spea_1199	-	pyruvate carboxylase subunit B
1198	 49.87	+1	1460958..1462088	+	376	157961028