version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1167 48.13 0 1413389..1415050 - 553 157960997 - Spea_1169 - recombination and repair protein 1168 42.08 0 1416201..1417217 - 338 157960998 - Spea_1170 - transposase IS116/IS110/IS902 family protein 1169 36.60 -2 1417740..1420280 + 846 157960999 - Spea_1171 - putative transcriptional regulator 1170 42.13 0 1421146..1421907 - 253 157961000 - Spea_1172 - pirin domain-containing protein 1171 40.85 -1 1422022..1423005 - 327 157961001 - Spea_1173 - putative glutathione S-transferase 1172 41.56 -1 1423068..1423517 - 149 157961002 - Spea_1174 - DoxX family protein 1173 42.40 0 1423734..1424648 + 304 157961003 - Spea_1175 - LysR family transcriptional regulator 1174 43.93 0 1424789..1426411 - 540 157961004 - Spea_1176 - response regulator receiver protein 1175 46.36 0 1426483..1428723 - 746 157961005 - Spea_1177 - Hpt sensor hybrid histidine kinase 1176 45.85 0 1428958..1429860 + 300 157961006 - Spea_1178 - LysR family transcriptional regulator 1177 41.42 -1 1429957..1430562 - 201 157961007 - Spea_1179 - hypothetical protein 1178 45.13 0 1430564..1433353 - 929 157961008 - Spea_1180 - hybrid sensory histidine kinase BarA 1179 46.71 0 1433451..1434788 + 445 157961009 - Spea_1181 - 23S rRNA 5-methyluridine methyltransferase 1180 46.20 0 1435005..1437212 + 735 157961010 - Spea_1182 - (p)ppGpp synthetase I, SpoT/RelA 1181 46.89 0 1437311..1438114 + 267 157961011 - Spea_1183 - nucleoside triphosphate pyrophosphohydrolase 1182 45.16 0 1438230..1439870 + 546 157961012 - Spea_1184 - CTP synthetase 1183 45.83 0 1439995..1441290 + 431 157961013 - Spea_1185 - phosphopyruvate hydratase 1184 48.48 +1 1441381..1441677 + 98 157961014 - Spea_1186 - septum formation initiator 1185 49.28 +1 1441729..1442424 + 231 157961015 - Spea_1187 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1186 46.46 0 1442477..1442956 + 159 157961016 - Spea_1188 - 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1187 46.57 0 1443055..1444119 + 354 157961017 - Spea_1189 - tRNA pseudouridine synthase D TruD 1188 45.29 0 1444116..1444868 + 250 157961018 - Spea_1190 - stationary-phase survival protein SurE 1189 47.48 0 1445346..1445981 + 211 157961019 - Spea_1191 - protein-L-isoaspartate O-methyltransferase 1190 41.86 -1 1446069..1446959 + 296 157961020 - Spea_1192 - peptidase M23B 1191 42.52 0 1447036..1448004 + 322 157961021 - Spea_1193 - RpoD family RNA polymerase sigma factor 1192 48.64 +1 1448117..1450696 - 859 157961022 - Spea_1194 - DNA mismatch repair protein 1193 45.22 0 1451017..1452084 + 355 157961023 - Spea_1195 - recombinase A 1194 45.62 0 1452516..1455143 + 875 157961024 - Spea_1196 - alanyl-tRNA synthetase 1195 41.41 -1 1455613..1455810 + 65 157961025 - Spea_1197 - carbon storage regulator, CsrA 1196 44.31 0 1458872..1459117 + 81 157961026 - Spea_1198 - sodium pump decarboxylase, gamma subunit 1197 47.02 0 1459138..1460949 + 603 157961027 - Spea_1199 - pyruvate carboxylase subunit B 1198 49.87 +1 1460958..1462088 + 376 157961028 - Spea_1200 - sodium ion-translocating decarboxylase, beta subunit 1199 46.50 0 1462229..1463170 + 313 157961029 - Spea_1201 - LysR family transcriptional regulator 1200 46.88 0 1463402..1464508 + 368 157961030 - Spea_1202 - agmatine deiminase 1201 43.83 0 1464553..1465638 + 361 157961031 - Spea_1203 - extracellular solute-binding protein 1202 44.22 0 1465721..1466593 + 290 157961032 - Spea_1204 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1203 39.78 -1 1466713..1466898 - 61 157961033 - Spea_1205 - hypothetical protein 1204 47.32 0 1467001..1468251 - 416 157961034 - Spea_1206 - sodium:dicarboxylate symporter 1205 46.69 0 1468994..1471831 + 945 157961035 - Spea_1207 - peptidase M16 domain-containing protein 1206 43.59 0 1472008..1473576 + 522 157961036 - Spea_1208 - glutamate--cysteine ligase 1207 46.49 0 1473579..1474019 + 146 157961037 - Spea_1209 - hypothetical protein 1208 47.09 0 1474143..1474760 + 205 157961038 - Spea_1210 - hypothetical protein 1209 47.42 0 1475309..1475812 + 167 157961039 - Spea_1211 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 1210 43.85 0 1475962..1476579 + 205 157961040 - Spea_1212 - ECF subfamily RNA polymerase sigma-24 factor 1211 46.56 0 1476569..1477135 + 188 157961041 - Spea_1213 - hypothetical protein 1212 41.73 -1 1477295..1477711 - 138 157961042 - Spea_1214 - hypothetical protein 1213 49.16 +1 1477930..1481208 + 1092 157961043 - Spea_1215 - peptidase S41 1214 47.66 0 1481454..1482605 + 383 157961044 - Spea_1216 - secretion protein HlyD family protein 1215 46.31 0 1482595..1483665 + 356 157961045 - Spea_1217 - hypothetical protein 1216 48.21 0 1483957..1484541 + 194 157961046 - Spea_1218 - putative lipoprotein 1217 41.67 -1 1484621..1485064 - 147 157961047 - Spea_1219 - OsmC family protein 1218 46.97 0 1485341..1485868 - 175 157961048 - Spea_1220 - hypothetical protein 1219 42.51 0 1486118..1486444 - 108 157961049 - Spea_1221 - hypothetical protein 1220 46.65 0 1486448..1488091 - 547 157961050 - Spea_1222 - PepSY-associated TM helix domain-containing protein 1221 46.15 0 1488095..1488406 - 103 157961051 - Spea_1223 - hypothetical protein 1222 42.58 0 1488993..1489349 + 118 157961052 - Spea_1224 - sigma 54 modulation protein/ribosomal protein S30EA 1223 48.42 0 1489454..1491382 - 642 157961053 - Spea_1225 - potassium efflux system protein 1224 47.18 0 1491385..1492005 - 206 157961054 - Spea_1226 - NAD(P)H dehydrogenase (quinone) 1225 47.03 0 1492366..1493577 + 403 157961055 - Spea_1227 - NnrS family protein 1226 48.87 +1 1493670..1495079 + 469 157961056 - Spea_1228 - nitrite reductase (cytochrome; ammonia-forming) 1227 41.72 -1 1495344..1495832 + 162 157961057 - Spea_1229 - hypothetical protein 1228 48.34 0 1495878..1496930 + 350 157961058 - Spea_1230 - AraC family transcriptional regulator 1229 48.78 +1 1497064..1499076 + 670 157961059 - Spea_1231 - beta-lactamase domain-containing protein 1230 33.58 -2 1499742..1500542 - 266 157961060 - Spea_1232 - hypothetical protein 1231 37.32 -2 1500535..1501386 - 283 157961061 - Spea_1233 - hypothetical protein 1232 47.59 0 1502313..1504550 - 745 157961062 - Spea_1234 - acyl-CoA dehydrogenase 1233 46.89 0 1504994..1506181 - 395 157961063 - Spea_1235 - ribosome-associated GTPase 1234 44.51 0 1506793..1507320 - 175 157961064 - Spea_1236 - putative lipoprotein 1235 48.38 0 1507332..1509491 - 719 157961065 - Spea_1237 - hypothetical protein 1236 45.06 0 1509927..1511111 + 394 157961066 - Spea_1238 - glycosyl transferase group 1 1237 43.92 0 1511101..1513311 + 736 157961067 - Spea_1239 - extracellular solute-binding protein 1238 43.31 0 1513360..1514181 + 273 157961068 - Spea_1240 - hypothetical protein 1239 47.35 0 1514218..1515216 - 332 157961069 - Spea_1241 - hypothetical protein 1240 38.82 -1 1515607..1516335 + 242 157961070 - Spea_1242 - hypothetical protein 1241 40.67 -1 1516340..1517866 + 508 157961071 - Spea_1243 - diguanylate phosphodiesterase 1242 42.07 0 1518035..1518595 - 186 157961072 - Spea_1244 - CBS domain-containing protein 1243 48.29 0 1518901..1519629 + 242 157961073 - Spea_1245 - nitroreductase A 1244 47.54 0 1519846..1520373 + 175 157961074 - Spea_1246 - PEBP family protein 1245 44.44 0 1520438..1521247 + 269 157961075 - Spea_1247 - AraC family transcriptional regulator 1246 40.64 -1 1522011..1522352 + 113 157961076 - Spea_1248 - alkylphosphonate utilization operon protein PhnA 1247 41.57 -1 1522829..1523641 - 270 157961077 - Spea_1249 - AraC family transcriptional regulator 1248 41.39 -1 1523743..1524276 + 177 157961078 - Spea_1250 - alkylhydroperoxidase 1249 38.36 -2 1524295..1524732 + 145 157961079 - Spea_1251 - hypothetical protein 1250 33.62 -2 1524818..1525516 - 232 157961080 - Spea_1252 - hypothetical protein 1251 35.14 -2 1525654..1527147 + 497 157961081 - Spea_1253 - hypothetical protein 1252 37.48 -2 1527312..1527938 + 208 157961082 - Spea_1254 - transposase 1253 39.75 -1 1527993..1528553 - 186 157961083 - Spea_1255 - integrase family protein 1254 44.69 0 1528687..1529100 - 137 157961084 - Spea_1256 - hypothetical protein 1255 50.29 +1 1529279..1529620 - 113 157961085 - Spea_1257 - hypothetical protein 1256 46.01 0 1529734..1530096 - 120 157961086 - Spea_1258 - hypothetical protein 1257 45.07 0 1530156..1530632 - 158 157961087 - Spea_1259 - DNA repair protein RadC 1258 40.69 -1 1530827..1531030 + 67 157961088 - Spea_1260 - phage transcriptional regulator, AlpA 1259 45.21 0 1531543..1531761 - 72 157961089 - Spea_1261 - hypothetical protein 1260 39.93 -1 1532360..1533223 - 287 157961090 - Spea_1262 - hypothetical protein 1261 42.88 0 1533379..1534656 + 425 157961091 - Spea_1263 - hypothetical protein 1262 42.11 0 1534646..1535215 + 189 157961092 - Spea_1264 - hypothetical protein 1263 41.10 -1 1535209..1538001 + 930 157961093 - Spea_1265 - hypothetical protein 1264 45.39 0 1537998..1538876 + 292 157961094 - Spea_1266 - hypothetical protein 1265 40.61 -1 1539298..1540548 + 416 157961095 - Spea_1267 - hypothetical protein 1266 42.49 0 1540535..1542358 + 607 157961096 - Spea_1268 - hypothetical protein 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0