IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
71	 53.44	+2	83843..84568	-	241	157959901	-	Spea_0071	-	flagellar basal-body rod protein FlgF
72	 48.88	+1	84587..85795	-	402	157959902	-	Spea_0072	-	flagellar hook protein FlgE
73	 47.58	0	85819..86478	-	219	157959903	-	Spea_0073	-	flagellar hook capping protein
74	 50.24	+1	86478..86897	-	139	157959904	-	Spea_0074	-	flagellar basal-body rod protein FlgC
75	 46.15	0	86906..87256	-	116	157959905	-	Spea_0075	-	flagellar basal body rod protein FlgB
76	 46.80	0	87320..88084	+	254	157959906	-	Spea_0076	-	SAF domain-containing protein
77	 45.26	0	88187..88471	+	94	157959907	-	Spea_0077	-	hypothetical protein
78	 46.62	0	88464..88922	+	152	157959908	-	Spea_0078	-	hypothetical protein
79	 46.14	0	88938..89351	-	137	157959909	-	Spea_0079	-	hypothetical protein
80	 51.57	+1	89366..90703	-	445	157959910	-	Spea_0080	-	FliI/YscN family ATPase
81	 49.47	+1	90681..91436	-	251	157959911	-	Spea_0081	-	flagellar assembly protein H
82	 48.32	0	91436..92449	-	337	157959912	-	Spea_0082	-	flagellar motor switch protein G
83	 48.44	0	92510..94210	-	566	157959913	-	Spea_0083	-	flagellar MS-ring protein
84	 46.02	0	94286..94624	-	112	157959914	-	Spea_0084	-	flagellar hook-basal body complex subunit FliE
85	 48.55	+1	94655..95962	-	435	157959915	-	Spea_0085	-	sigma-54 dependent trancsriptional regulator
86	 47.26	0	95949..96860	-	303	157959916	-	Spea_0086	-	OmpA/MotB domain-containing protein
87	 45.69	0	97405..98286	+	293	157959917	-	Spea_0087	-	hypothetical protein
88	 43.70	0	98279..98635	+	118	157959918	-	Spea_0088	-	flagellar motor switch protein FliN
89	 45.82	0	98638..99366	+	242	157959919	-	Spea_0089	-	flagellar biosynthesis protein FliP
90	 46.30	0	99553..99822	+	89	157959920	-	Spea_0090	-	flagellar biosynthetic protein FliQ
91	 46.92	0	99901..100680	+	259	157959921	-	Spea_0091	-	flagellar biosynthetic protein FliR
92	 46.95	0	100677..101807	+	376	157959922	-	Spea_0092	-	flagellar biosynthetic protein FlhB
93	 49.86	+1	101823..103904	+	693	157959923	-	Spea_0093	-	flagellar biosynthesis protein FlhA
94	 49.54	+1	103963..104937	-	324	157959924	-	Spea_0094	-	alpha/beta hydrolase fold
95	 50.22	+1	105266..107065	-	599	157959925	-	Spea_0095	-	hypothetical protein
96	 44.59	0	107416..108756	-	446	157959926	-	Spea_0096	-	coproporphyrinogen III oxidase
97	 44.44	0	109044..109511	-	155	157959927	-	Spea_0097	-	hypothetical protein
98	 42.27	0	109605..110141	-	178	157959928	-	Spea_0098	-	hypothetical protein
99	 44.25	0	110195..110863	-	222	157959929	-	Spea_0099	-	hypothetical protein
100	 44.28	0	111657..112277	-	206	157959930	-	Spea_0100	-	cytochrome c class I
101	 43.51	0	112447..113124	+	225	157959931	-	Spea_0101	-	GTPase EngB
102	 47.04	0	113799..116555	-	918	157959932	-	Spea_0102	-	DNA polymerase I
103	 46.64	0	116943..117596	+	217	157959933	-	Spea_0103	-	isoprenoid biosynthesis protein with amidotransferase-like domain
104	 47.02	0	117717..118556	-	279	157959934	-	Spea_0104	-	rhomboid family protein
105	 43.04	0	118577..118885	-	102	157959935	-	Spea_0105	-	rhodanese domain-containing protein
106	 48.25	0	118993..120018	-	341	157959936	-	Spea_0106	-	L-threonine 3-dehydrogenase
107	 47.70	0	120102..121298	-	398	157959937	-	Spea_0107	-	2-amino-3-ketobutyrate coenzyme A ligase
108	 42.37	0	121550..122191	-	213	157959938	-	Spea_0108	-	TetR family transcriptional regulator
109	 48.66	+1	122368..123633	+	421	157959939	-	Spea_0109	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
110	 47.40	0	123700..124431	-	243	157959940	-	Spea_0110	-	3-deoxy-D-manno-octulosonic-acid kinase
111	 47.50	0	124517..125596	+	359	157959941	-	Spea_0111	-	glycosyl transferase family protein
112	 45.52	0	125661..126743	+	360	157959942	-	Spea_0112	-	hypothetical protein
113	 42.73	0	126743..127828	+	361	157959943	-	Spea_0113	-	glycosyl transferase group 1
114	 43.28	0	127858..128913	+	351	157959944	-	Spea_0114	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
115	 39.74	-1	128921..129997	-	358	157959945	-	Spea_0115	-	glycosyl transferase group 1
116	 40.86	-1	130187..130930	+	247	157959946	-	Spea_0116	-	glycosyl transferase family protein
117	 43.21	0	131013..131174	+	53	157959947	-	Spea_0117	-	hypothetical protein
118	 45.10	0	131327..132550	+	407	157959948	-	Spea_0118	-	sodium/glutamate symporter
119	 50.88	+1	132694..132978	+	94	157959949	-	Spea_0119	-	hypothetical protein
120	 48.00	0	132978..133850	+	290	157959950	-	Spea_0120	-	hypothetical protein
121	 44.66	0	133841..134626	+	261	157959951	-	Spea_0121	-	hypothetical protein
122	 44.38	0	134632..135111	+	159	157959952	-	Spea_0122	-	ECF subfamily RNA polymerase sigma-24 factor
123	 49.03	+1	135114..135884	+	256	157959953	-	Spea_0123	-	hypothetical protein
124	 50.72	+1	135909..136391	-	160	157959954	-	Spea_0124	-	hypothetical protein
125	 43.56	0	136765..138279	+	504	157959955	-	Spea_0125	-	catalase
126	 43.87	0	138483..139061	+	192	157959956	-	Spea_0126	-	ankyrin
127	 46.43	0	139162..139932	-	256	157959957	-	Spea_0127	-	molybdopterin biosynthesis protein MoeB
128	 49.88	+1	139967..141211	-	414	157959958	-	Spea_0128	-	molybdenum cofactor synthesis domain-containing protein
129	 44.32	0	141562..142089	+	175	157959959	-	Spea_0129	-	ferroxidase
130	 45.29	0	142174..145392	-	1072	157959960	-	Spea_0130	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
131	 50.08	+1	145678..146316	-	212	157959961	-	Spea_0131	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
132	 47.75	0	146933..149083	+	716	157959962	-	Spea_0132	-	oligopeptidase B
133	 47.50	0	149083..149442	+	119	157959963	-	Spea_0133	-	excinuclease ABC subunit C
134	 44.85	0	149524..150183	-	219	157959964	-	Spea_0134	-	signal peptidase I
135	 47.22	0	150597..151352	-	251	157959965	-	Spea_0135	-	putative lipoprotein
136	 46.77	0	151630..152433	+	267	157959966	-	Spea_0136	-	methyltransferase type 12
137	 48.40	0	152488..154326	-	612	157959967	-	Spea_0137	-	peptidase M14 carboxypeptidase A
138	 44.29	0	154511..154720	-	69	157959968	-	Spea_0138	-	XRE family transcriptional regulator
139	 43.50	0	154717..155139	-	140	157959969	-	Spea_0139	-	hypothetical protein
140	 48.96	+1	155440..156981	-	513	157959970	-	Spea_0140	-	phosphoenolpyruvate carboxykinase
141	 45.70	0	157228..158100	-	290	157959971	-	Spea_0141	-	Hsp33-like chaperonin
142	 44.36	0	158117..158515	-	132	157959972	-	Spea_0142	-	RNA-binding S4 domain-containing protein
143	 45.10	0	158789..159706	+	305	157959973	-	Spea_0143	-	general secretion pathway protein C
144	 46.04	0	159791..161923	+	710	157959974	-	Spea_0144	-	general secretion pathway protein D
145	 47.07	0	161916..163487	+	523	157959975	-	Spea_0145	-	general secretory pathway protein E
146	 46.49	0	163491..164714	+	407	157959976	-	Spea_0146	-	general secretion pathway protein F
147	 43.68	0	164778..165212	+	144	157959977	-	Spea_0147	-	general secretion pathway protein G
148	 46.60	0	165175..165807	+	210	157959978	-	Spea_0148	-	general secretion pathway protein H
149	 45.50	0	165804..166181	+	125	157959979	-	Spea_0149	-	general secretion pathway protein I
150	 48.76	+1	166162..166887	+	241	157959980	-	Spea_0150	-	general secretion pathway protein J
151	 45.36	0	166887..167867	+	326	157959981	-	Spea_0151	-	general secretion pathway protein K
152	 47.32	0	167912..169105	+	397	157959982	-	Spea_0152	-	general secretion pathway protein L
153	 45.49	0	169107..169583	+	158	157959983	-	Spea_0153	-	general secretion pathway M protein
154	 44.01	0	169593..170351	+	252	157959984	-	Spea_0154	-	type II secretion system protein N
155	 44.84	0	170442..171110	-	222	157959985	-	Spea_0155	-	HAD family hydrolase
156	 45.23	0	171198..171752	+	184	157959986	-	Spea_0156	-	ADP-ribose diphosphatase NudE
157	 45.43	0	171797..172606	+	269	157959987	-	Spea_0157	-	3'(2'),5'-bisphosphate nucleotidase
158	 45.24	0	172599..173060	+	153	157959988	-	Spea_0158	-	GCN5-related N-acetyltransferase
159	 44.21	0	173066..174748	+	560	157959989	-	Spea_0159	-	major facilitator transporter
160	 45.63	0	174763..175860	-	365	157959990	-	Spea_0160	-	tRNA 2-selenouridine synthase
161	 47.65	0	175860..176900	-	346	157959991	-	Spea_0161	-	selenide, water dikinase
162	 44.77	0	177091..178227	-	378	157959992	-	Spea_0162	-	stearoyl-CoA 9-desaturase
163	 44.10	0	178274..178951	+	225	157959993	-	Spea_0163	-	DNA-binding transcriptional repressor FabR
164	 41.53	-1	179017..180114	-	365	157959994	-	Spea_0164	-	tRNA (uracil-5-)-methyltransferase
165	 42.26	0	180312..181118	+	268	157959995	-	Spea_0165	-	glutamate racemase
166	 40.13	-1	181132..181587	-	151	157959996	-	Spea_0166	-	RNP-1 like RNA-binding protein
167	 40.94	-1	188407..189432	+	341	157959997	-	Spea_0167	-	UDP-N-acetylenolpyruvoylglucosamine reductase
168	 46.11	0	189434..190396	+	320	157959998	-	Spea_0168	-	biotin--protein ligase
169	 39.64	-1	190429..191379	-	316	157959999	-	Spea_0169	-	pantothenate kinase
170	 45.91	0	192087..193271	+	394	157960000	-	Spea_0170	-	elongation factor Tu
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.