version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1109 46.12 0 1345820..1346734 + 304 157960939 - Spea_1111 - glutaminase 1110 44.24 0 1346968..1347783 + 271 157960940 - Spea_1112 - hypothetical protein 1111 45.75 0 1348137..1349078 + 313 157960941 - Spea_1113 - LysR family transcriptional regulator 1112 42.08 0 1349870..1350886 + 338 157960942 - Spea_1114 - transposase IS116/IS110/IS902 family protein 1113 44.44 0 1351573..1351833 + 86 157960943 - Spea_1115 - hypothetical protein 1114 45.42 0 1352097..1354082 + 661 157960944 - Spea_1116 - hypothetical protein 1115 48.70 +1 1354169..1355326 - 385 157960945 - Spea_1117 - C4-dicarboxylate transporter/malic acid transport protein 1116 43.92 0 1355486..1356382 + 298 157960946 - Spea_1118 - LysR family transcriptional regulator 1117 45.87 0 1356467..1358125 - 552 157960947 - Spea_1119 - cytochrome bd ubiquinol oxidase subunit I 1118 47.51 0 1358352..1360235 - 627 157960948 - Spea_1120 - hypothetical protein 1119 47.41 0 1360391..1361527 - 378 157960949 - Spea_1121 - putative oxygen-independent coproporphyrinogen III oxidase 1120 47.33 0 1361527..1362126 - 199 157960950 - Spea_1122 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1121 41.61 -1 1362253..1362687 - 144 157960951 - Spea_1123 - hypothetical protein 1122 46.52 0 1362771..1363043 - 90 157960952 - Spea_1124 - hypothetical protein 1123 44.63 0 1363058..1363606 - 182 157960953 - Spea_1125 - protein of unknown function YGGT 1124 48.23 0 1363642..1364460 - 272 157960954 - Spea_1126 - pyrroline-5-carboxylate reductase 1125 49.72 +1 1364663..1365364 - 233 157960955 - Spea_1127 - alanine racemase domain-containing protein 1126 47.59 0 1365400..1366437 + 345 157960956 - Spea_1128 - twitching motility protein 1127 49.24 +1 1366461..1367573 + 370 157960957 - Spea_1129 - twitching motility protein 1128 49.70 +1 1367696..1368709 + 337 157960958 - Spea_1130 - ferrochelatase 1129 48.59 +1 1368868..1369293 - 141 157960959 - Spea_1131 - Holliday junction resolvase-like protein 1130 47.82 0 1369332..1369904 - 190 157960960 - Spea_1132 - hypothetical protein 1131 44.24 0 1369917..1370246 - 109 157960961 - Spea_1133 - translation initiation factor Sui1 1132 45.35 0 1370648..1370980 - 110 157960962 - Spea_1134 - hypothetical protein 1133 42.83 0 1371140..1371697 + 185 157960963 - Spea_1135 - hypothetical protein 1134 45.16 0 1371822..1372700 - 292 157960964 - Spea_1136 - LysR family transcriptional regulator 1135 44.44 0 1372784..1373197 + 137 157960965 - Spea_1137 - transmembrane pair domain-containing protein 1136 46.04 0 1373454..1375412 + 652 157960966 - Spea_1138 - TonB-dependent receptor plug 1137 46.90 0 1375692..1376288 + 198 157960967 - Spea_1139 - OmpA/MotB domain-containing protein 1138 45.45 0 1376318..1377142 + 274 157960968 - Spea_1140 - MscS mechanosensitive ion channel 1139 43.66 0 1377216..1377854 - 212 157960969 - Spea_1141 - hypothetical protein 1140 45.92 0 1378189..1379205 + 338 157960970 - Spea_1142 - threonine aldolase 1141 44.82 0 1379729..1380616 - 295 157960971 - Spea_1143 - hypothetical protein 1142 51.24 +1 1380744..1382351 - 535 157960972 - Spea_1144 - alkaline phosphatase 1143 48.87 +1 1382441..1383940 - 499 157960973 - Spea_1145 - alkaline phosphatase 1144 47.14 0 1384243..1384452 - 69 157960974 - Spea_1146 - hypothetical protein 1145 39.14 -1 1385120..1385515 - 131 157960975 - Spea_1147 - hypothetical protein 1146 45.93 0 1386127..1387428 - 433 157960976 - Spea_1148 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1147 44.35 0 1387838..1388200 - 120 157960977 - Spea_1149 - hypothetical protein 1148 47.10 0 1388659..1389813 + 384 157960978 - Spea_1150 - RND family efflux transporter MFP subunit 1149 49.87 +1 1390070..1393201 + 1043 157960979 - Spea_1151 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 1150 47.87 0 1393696..1394844 - 382 157960980 - Spea_1152 - iron-containing alcohol dehydrogenase 1151 40.09 -1 1394863..1395291 - 142 157960981 - Spea_1153 - hypothetical protein 1152 46.62 0 1395486..1395959 - 157 157960982 - Spea_1154 - hypothetical protein 1153 47.96 0 1396442..1399552 - 1036 157960983 - Spea_1155 - acriflavin resistance protein 1154 49.15 +1 1399553..1400665 - 370 157960984 - Spea_1156 - RND family efflux transporter MFP subunit 1155 45.24 0 1401104..1402186 - 360 157960985 - Spea_1157 - metallophosphoesterase 1156 45.25 0 1402275..1403432 - 385 157960986 - Spea_1158 - acyltransferase 3 1157 48.02 0 1403683..1405350 - 555 157960987 - Spea_1159 - putative ABC transporter ATP-binding protein 1158 46.62 0 1405628..1406884 + 418 157960988 - Spea_1160 - glycine hydroxymethyltransferase 1159 47.11 0 1407071..1407520 + 149 157960989 - Spea_1161 - transcriptional regulator NrdR 1160 51.25 +1 1407589..1408710 + 373 157960990 - Spea_1162 - riboflavin biosynthesis protein RibD 1161 48.05 0 1408714..1409379 + 221 157960991 - Spea_1163 - riboflavin synthase subunit alpha 1162 48.55 +1 1409517..1410620 + 367 157960992 - Spea_1164 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 1163 45.70 0 1410766..1411242 + 158 157960993 - Spea_1165 - 6,7-dimethyl-8-ribityllumazine synthase 1164 44.85 0 1411257..1411664 + 135 157960994 - Spea_1166 - transcription antitermination protein NusB 1165 47.29 0 1411838..1412797 + 319 157960995 - Spea_1167 - thiamine-monophosphate kinase 1166 48.69 +1 1412797..1413291 + 164 157960996 - Spea_1168 - phosphatidylglycerophosphatase A 1167 48.13 0 1413389..1415050 - 553 157960997 - Spea_1169 - recombination and repair protein 1168 42.08 0 1416201..1417217 - 338 157960998 - Spea_1170 - transposase IS116/IS110/IS902 family protein 1169 36.60 -2 1417740..1420280 + 846 157960999 - Spea_1171 - putative transcriptional regulator 1170 42.13 0 1421146..1421907 - 253 157961000 - Spea_1172 - pirin domain-containing protein 1171 40.85 -1 1422022..1423005 - 327 157961001 - Spea_1173 - putative glutathione S-transferase 1172 41.56 -1 1423068..1423517 - 149 157961002 - Spea_1174 - DoxX family protein 1173 42.40 0 1423734..1424648 + 304 157961003 - Spea_1175 - LysR family transcriptional regulator 1174 43.93 0 1424789..1426411 - 540 157961004 - Spea_1176 - response regulator receiver protein 1175 46.36 0 1426483..1428723 - 746 157961005 - Spea_1177 - Hpt sensor hybrid histidine kinase 1176 45.85 0 1428958..1429860 + 300 157961006 - Spea_1178 - LysR family transcriptional regulator 1177 41.42 -1 1429957..1430562 - 201 157961007 - Spea_1179 - hypothetical protein 1178 45.13 0 1430564..1433353 - 929 157961008 - Spea_1180 - hybrid sensory histidine kinase BarA 1179 46.71 0 1433451..1434788 + 445 157961009 - Spea_1181 - 23S rRNA 5-methyluridine methyltransferase 1180 46.20 0 1435005..1437212 + 735 157961010 - Spea_1182 - (p)ppGpp synthetase I, SpoT/RelA 1181 46.89 0 1437311..1438114 + 267 157961011 - Spea_1183 - nucleoside triphosphate pyrophosphohydrolase 1182 45.16 0 1438230..1439870 + 546 157961012 - Spea_1184 - CTP synthetase 1183 45.83 0 1439995..1441290 + 431 157961013 - Spea_1185 - phosphopyruvate hydratase 1184 48.48 +1 1441381..1441677 + 98 157961014 - Spea_1186 - septum formation initiator 1185 49.28 +1 1441729..1442424 + 231 157961015 - Spea_1187 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1186 46.46 0 1442477..1442956 + 159 157961016 - Spea_1188 - 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1187 46.57 0 1443055..1444119 + 354 157961017 - Spea_1189 - tRNA pseudouridine synthase D TruD 1188 45.29 0 1444116..1444868 + 250 157961018 - Spea_1190 - stationary-phase survival protein SurE 1189 47.48 0 1445346..1445981 + 211 157961019 - Spea_1191 - protein-L-isoaspartate O-methyltransferase 1190 41.86 -1 1446069..1446959 + 296 157961020 - Spea_1192 - peptidase M23B 1191 42.52 0 1447036..1448004 + 322 157961021 - Spea_1193 - RpoD family RNA polymerase sigma factor 1192 48.64 +1 1448117..1450696 - 859 157961022 - Spea_1194 - DNA mismatch repair protein 1193 45.22 0 1451017..1452084 + 355 157961023 - Spea_1195 - recombinase A 1194 45.62 0 1452516..1455143 + 875 157961024 - Spea_1196 - alanyl-tRNA synthetase 1195 41.41 -1 1455613..1455810 + 65 157961025 - Spea_1197 - carbon storage regulator, CsrA 1196 44.31 0 1458872..1459117 + 81 157961026 - Spea_1198 - sodium pump decarboxylase, gamma subunit 1197 47.02 0 1459138..1460949 + 603 157961027 - Spea_1199 - pyruvate carboxylase subunit B 1198 49.87 +1 1460958..1462088 + 376 157961028 - Spea_1200 - sodium ion-translocating decarboxylase, beta subunit 1199 46.50 0 1462229..1463170 + 313 157961029 - Spea_1201 - LysR family transcriptional regulator 1200 46.88 0 1463402..1464508 + 368 157961030 - Spea_1202 - agmatine deiminase 1201 43.83 0 1464553..1465638 + 361 157961031 - Spea_1203 - extracellular solute-binding protein 1202 44.22 0 1465721..1466593 + 290 157961032 - Spea_1204 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1203 39.78 -1 1466713..1466898 - 61 157961033 - Spea_1205 - hypothetical protein 1204 47.32 0 1467001..1468251 - 416 157961034 - Spea_1206 - sodium:dicarboxylate symporter 1205 46.69 0 1468994..1471831 + 945 157961035 - Spea_1207 - peptidase M16 domain-containing protein 1206 43.59 0 1472008..1473576 + 522 157961036 - Spea_1208 - glutamate--cysteine ligase 1207 46.49 0 1473579..1474019 + 146 157961037 - Spea_1209 - hypothetical protein 1208 47.09 0 1474143..1474760 + 205 157961038 - Spea_1210 - hypothetical protein 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0