version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1085 41.35 -1 1315749..1316309 + 186 157960915 - Spea_1087 - type IV pilus modification protein PilV 1086 43.33 0 1316314..1317303 + 329 157960916 - Spea_1088 - type IV pilus assembly protein PilW 1087 42.24 0 1317314..1317751 + 145 157960917 - Spea_1089 - type IV pilus assembly protein PilX 1088 43.04 0 1317754..1321338 + 1194 157960918 - Spea_1090 - type IV pilin biogenesis protein, putative 1089 39.19 -1 1321347..1321739 + 130 157960919 - Spea_1091 - methylation site containing protein 1090 38.49 -2 1321790..1322041 + 83 157960920 - Spea_1092 - hypothetical protein 1091 38.18 -2 1322086..1322622 - 178 157960921 - Spea_1093 - type IV pilus biogenesis protein, putative 1092 45.42 0 1322785..1323297 - 170 157960922 - Spea_1094 - type IV pilus biogenesis protein, putative 1093 39.53 -1 1323545..1323883 + 112 157960923 - Spea_1095 - nitrogen regulatory protein P-II 1094 43.07 0 1323979..1324995 - 338 157960924 - Spea_1096 - LacI family transcription regulator 1095 45.25 0 1325416..1328025 + 869 157960925 - Spea_1097 - TonB-dependent receptor 1096 45.51 0 1328192..1329718 + 508 157960926 - Spea_1098 - tryptophan halogenase 1097 40.74 -1 1329785..1330513 - 242 157960927 - Spea_1099 - SapC family protein 1098 46.89 0 1331282..1334002 + 906 157960928 - Spea_1100 - Beta-N-acetylhexosaminidase 1099 47.38 0 1334240..1335136 + 298 157960929 - Spea_1101 - ATPase BadF/BadG/BcrA/BcrD type 1100 48.50 +1 1335168..1336301 + 377 157960930 - Spea_1102 - N-acetylglucosamine-6-phosphate deacetylase 1101 44.64 0 1336417..1337601 + 394 157960931 - Spea_1103 - hypothetical protein 1102 44.52 0 1337892..1339205 + 437 157960932 - Spea_1104 - glucose/galactose transporter 1103 41.60 -1 1341198..1341596 + 132 157960933 - Spea_1105 - transposase 1104 39.71 -1 1341680..1342432 + 250 157960934 - Spea_1106 - integrase catalytic region 1105 40.50 -1 1343112..1343390 - 92 157960935 - Spea_1107 - hypothetical protein 1106 46.85 0 1343393..1344457 - 354 157960936 - Spea_1108 - A/G-specific adenine glycosylase 1107 46.78 0 1344730..1345443 + 237 157960937 - Spea_1109 - tRNA (guanine-N(7))-methyltransferase 1108 43.12 0 1345494..1345820 + 108 157960938 - Spea_1110 - hypothetical protein 1109 46.12 0 1345820..1346734 + 304 157960939 - Spea_1111 - glutaminase 1110 44.24 0 1346968..1347783 + 271 157960940 - Spea_1112 - hypothetical protein 1111 45.75 0 1348137..1349078 + 313 157960941 - Spea_1113 - LysR family transcriptional regulator 1112 42.08 0 1349870..1350886 + 338 157960942 - Spea_1114 - transposase IS116/IS110/IS902 family protein 1113 44.44 0 1351573..1351833 + 86 157960943 - Spea_1115 - hypothetical protein 1114 45.42 0 1352097..1354082 + 661 157960944 - Spea_1116 - hypothetical protein 1115 48.70 +1 1354169..1355326 - 385 157960945 - Spea_1117 - C4-dicarboxylate transporter/malic acid transport protein 1116 43.92 0 1355486..1356382 + 298 157960946 - Spea_1118 - LysR family transcriptional regulator 1117 45.87 0 1356467..1358125 - 552 157960947 - Spea_1119 - cytochrome bd ubiquinol oxidase subunit I 1118 47.51 0 1358352..1360235 - 627 157960948 - Spea_1120 - hypothetical protein 1119 47.41 0 1360391..1361527 - 378 157960949 - Spea_1121 - putative oxygen-independent coproporphyrinogen III oxidase 1120 47.33 0 1361527..1362126 - 199 157960950 - Spea_1122 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1121 41.61 -1 1362253..1362687 - 144 157960951 - Spea_1123 - hypothetical protein 1122 46.52 0 1362771..1363043 - 90 157960952 - Spea_1124 - hypothetical protein 1123 44.63 0 1363058..1363606 - 182 157960953 - Spea_1125 - protein of unknown function YGGT 1124 48.23 0 1363642..1364460 - 272 157960954 - Spea_1126 - pyrroline-5-carboxylate reductase 1125 49.72 +1 1364663..1365364 - 233 157960955 - Spea_1127 - alanine racemase domain-containing protein 1126 47.59 0 1365400..1366437 + 345 157960956 - Spea_1128 - twitching motility protein 1127 49.24 +1 1366461..1367573 + 370 157960957 - Spea_1129 - twitching motility protein 1128 49.70 +1 1367696..1368709 + 337 157960958 - Spea_1130 - ferrochelatase 1129 48.59 +1 1368868..1369293 - 141 157960959 - Spea_1131 - Holliday junction resolvase-like protein 1130 47.82 0 1369332..1369904 - 190 157960960 - Spea_1132 - hypothetical protein 1131 44.24 0 1369917..1370246 - 109 157960961 - Spea_1133 - translation initiation factor Sui1 1132 45.35 0 1370648..1370980 - 110 157960962 - Spea_1134 - hypothetical protein 1133 42.83 0 1371140..1371697 + 185 157960963 - Spea_1135 - hypothetical protein 1134 45.16 0 1371822..1372700 - 292 157960964 - Spea_1136 - LysR family transcriptional regulator 1135 44.44 0 1372784..1373197 + 137 157960965 - Spea_1137 - transmembrane pair domain-containing protein 1136 46.04 0 1373454..1375412 + 652 157960966 - Spea_1138 - TonB-dependent receptor plug 1137 46.90 0 1375692..1376288 + 198 157960967 - Spea_1139 - OmpA/MotB domain-containing protein 1138 45.45 0 1376318..1377142 + 274 157960968 - Spea_1140 - MscS mechanosensitive ion channel 1139 43.66 0 1377216..1377854 - 212 157960969 - Spea_1141 - hypothetical protein 1140 45.92 0 1378189..1379205 + 338 157960970 - Spea_1142 - threonine aldolase 1141 44.82 0 1379729..1380616 - 295 157960971 - Spea_1143 - hypothetical protein 1142 51.24 +1 1380744..1382351 - 535 157960972 - Spea_1144 - alkaline phosphatase 1143 48.87 +1 1382441..1383940 - 499 157960973 - Spea_1145 - alkaline phosphatase 1144 47.14 0 1384243..1384452 - 69 157960974 - Spea_1146 - hypothetical protein 1145 39.14 -1 1385120..1385515 - 131 157960975 - Spea_1147 - hypothetical protein 1146 45.93 0 1386127..1387428 - 433 157960976 - Spea_1148 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1147 44.35 0 1387838..1388200 - 120 157960977 - Spea_1149 - hypothetical protein 1148 47.10 0 1388659..1389813 + 384 157960978 - Spea_1150 - RND family efflux transporter MFP subunit 1149 49.87 +1 1390070..1393201 + 1043 157960979 - Spea_1151 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 1150 47.87 0 1393696..1394844 - 382 157960980 - Spea_1152 - iron-containing alcohol dehydrogenase 1151 40.09 -1 1394863..1395291 - 142 157960981 - Spea_1153 - hypothetical protein 1152 46.62 0 1395486..1395959 - 157 157960982 - Spea_1154 - hypothetical protein 1153 47.96 0 1396442..1399552 - 1036 157960983 - Spea_1155 - acriflavin resistance protein 1154 49.15 +1 1399553..1400665 - 370 157960984 - Spea_1156 - RND family efflux transporter MFP subunit 1155 45.24 0 1401104..1402186 - 360 157960985 - Spea_1157 - metallophosphoesterase 1156 45.25 0 1402275..1403432 - 385 157960986 - Spea_1158 - acyltransferase 3 1157 48.02 0 1403683..1405350 - 555 157960987 - Spea_1159 - putative ABC transporter ATP-binding protein 1158 46.62 0 1405628..1406884 + 418 157960988 - Spea_1160 - glycine hydroxymethyltransferase 1159 47.11 0 1407071..1407520 + 149 157960989 - Spea_1161 - transcriptional regulator NrdR 1160 51.25 +1 1407589..1408710 + 373 157960990 - Spea_1162 - riboflavin biosynthesis protein RibD 1161 48.05 0 1408714..1409379 + 221 157960991 - Spea_1163 - riboflavin synthase subunit alpha 1162 48.55 +1 1409517..1410620 + 367 157960992 - Spea_1164 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 1163 45.70 0 1410766..1411242 + 158 157960993 - Spea_1165 - 6,7-dimethyl-8-ribityllumazine synthase 1164 44.85 0 1411257..1411664 + 135 157960994 - Spea_1166 - transcription antitermination protein NusB 1165 47.29 0 1411838..1412797 + 319 157960995 - Spea_1167 - thiamine-monophosphate kinase 1166 48.69 +1 1412797..1413291 + 164 157960996 - Spea_1168 - phosphatidylglycerophosphatase A 1167 48.13 0 1413389..1415050 - 553 157960997 - Spea_1169 - recombination and repair protein 1168 42.08 0 1416201..1417217 - 338 157960998 - Spea_1170 - transposase IS116/IS110/IS902 family protein 1169 36.60 -2 1417740..1420280 + 846 157960999 - Spea_1171 - putative transcriptional regulator 1170 42.13 0 1421146..1421907 - 253 157961000 - Spea_1172 - pirin domain-containing protein 1171 40.85 -1 1422022..1423005 - 327 157961001 - Spea_1173 - putative glutathione S-transferase 1172 41.56 -1 1423068..1423517 - 149 157961002 - Spea_1174 - DoxX family protein 1173 42.40 0 1423734..1424648 + 304 157961003 - Spea_1175 - LysR family transcriptional regulator 1174 43.93 0 1424789..1426411 - 540 157961004 - Spea_1176 - response regulator receiver protein 1175 46.36 0 1426483..1428723 - 746 157961005 - Spea_1177 - Hpt sensor hybrid histidine kinase 1176 45.85 0 1428958..1429860 + 300 157961006 - Spea_1178 - LysR family transcriptional regulator 1177 41.42 -1 1429957..1430562 - 201 157961007 - Spea_1179 - hypothetical protein 1178 45.13 0 1430564..1433353 - 929 157961008 - Spea_1180 - hybrid sensory histidine kinase BarA 1179 46.71 0 1433451..1434788 + 445 157961009 - Spea_1181 - 23S rRNA 5-methyluridine methyltransferase 1180 46.20 0 1435005..1437212 + 735 157961010 - Spea_1182 - (p)ppGpp synthetase I, SpoT/RelA 1181 46.89 0 1437311..1438114 + 267 157961011 - Spea_1183 - nucleoside triphosphate pyrophosphohydrolase 1182 45.16 0 1438230..1439870 + 546 157961012 - Spea_1184 - CTP synthetase 1183 45.83 0 1439995..1441290 + 431 157961013 - Spea_1185 - phosphopyruvate hydratase 1184 48.48 +1 1441381..1441677 + 98 157961014 - Spea_1186 - septum formation initiator 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0