IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1049	 47.12	0	1273507..1274253	+	248	157960879	-	Spea_1051	-	tRNA (guanine-N(1)-)-methyltransferase
1050	 46.05	0	1274290..1274643	+	117	157960880	-	Spea_1052	-	50S ribosomal protein L19
1051	 46.34	0	1275021..1276112	+	363	157960881	-	Spea_1053	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1052	 46.06	0	1276112..1277266	+	384	157960882	-	Spea_1054	-	bifunctional chorismate mutase/prephenate dehydrogenase
1053	 45.17	0	1277672..1279336	+	554	157960883	-	Spea_1055	-	hydroxylamine reductase
1054	 45.87	0	1279439..1280563	+	374	157960884	-	Spea_1056	-	oxidoreductase FAD-binding subunit
1055	 48.38	0	1280747..1281085	+	112	157960885	-	Spea_1057	-	hypothetical protein
1056	 43.05	0	1281133..1282419	+	428	157960886	-	Spea_1058	-	sodium/hydrogen exchanger
1057	 45.04	0	1282497..1284470	-	657	157960887	-	Spea_1059	-	chorismate mutase
1058	 41.32	-1	1284778..1285140	-	120	157960888	-	Spea_1060	-	sigma 54 modulation protein/ribosomal protein S30EA
1059	 44.30	0	1285450..1286142	+	230