version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1029 45.60 0 1254502..1255080 + 192 157960859 - Spea_1031 - RNA polymerase sigma factor RpoE 1030 45.87 0 1255104..1255709 + 201 157960860 - Spea_1032 - anti sigma-E protein, RseA 1031 47.27 0 1255722..1256654 + 310 157960861 - Spea_1033 - sigma E regulatory protein, MucB/RseB 1032 43.87 0 1256668..1257132 + 154 157960862 - Spea_1034 - positive regulator of sigma E, RseC/MucC 1033 43.66 0 1257261..1259051 + 596 157960863 - Spea_1035 - GTP-binding protein LepA 1034 44.66 0 1259192..1260109 + 305 157960864 - Spea_1036 - signal peptidase I 1035 43.81 0 1260111..1260788 + 225 157960865 - Spea_1037 - ribonuclease III 1036 45.52 0 1260785..1261777 + 330 157960866 - Spea_1038 - GTP-binding protein Era 1037 46.38 0 1261937..1262626 + 229 157960867 - Spea_1039 - DNA repair protein RecO 1038 47.70 0 1262750..1263487 + 245 157960868 - Spea_1040 - pyridoxal phosphate biosynthetic protein PdxJ 1039 48.74 +1 1263587..1263982 + 131 157960869 - Spea_1041 - holo-acyl-carrier-protein synthase 1040 43.15 0 1263996..1264484 - 162 157960870 - Spea_1042 - GCN5-related N-acetyltransferase 1041 43.95 0 1264914..1265855 - 313 157960871 - Spea_1043 - Dyp-type peroxidase family protein 1042 42.97 0 1266453..1267511 + 352 157960872 - Spea_1044 - hypothetical protein 1043 41.57 -1 1267843..1268376 + 177 157960873 - Spea_1045 - hypothetical protein 1044 44.31 0 1268473..1269756 - 427 157960874 - Spea_1046 - hypothetical protein 1045 46.13 0 1269902..1270690 - 262 157960875 - Spea_1047 - cytochrome c assembly protein 1046 47.45 0 1271098..1272471 + 457 157960876 - Spea_1048 - signal recognition particle protein 1047 48.81 +1 1272689..1272940 + 83 157960877 - Spea_1049 - 30S ribosomal protein S16 1048 44.26 0 1272961..1273491 + 176 157960878 - Spea_1050 - 16S rRNA-processing protein 1049 47.12 0 1273507..1274253 + 248 157960879 - Spea_1051 - tRNA (guanine-N(1)-)-methyltransferase 1050 46.05 0 1274290..1274643 + 117 157960880 - Spea_1052 - 50S ribosomal protein L19 1051 46.34 0 1275021..1276112 + 363 157960881 - Spea_1053 - phospho-2-dehydro-3-deoxyheptonate aldolase 1052 46.06 0 1276112..1277266 + 384 157960882 - Spea_1054 - bifunctional chorismate mutase/prephenate dehydrogenase 1053 45.17 0 1277672..1279336 + 554 157960883 - Spea_1055 - hydroxylamine reductase 1054 45.87 0 1279439..1280563 + 374 157960884 - Spea_1056 - oxidoreductase FAD-binding subunit 1055 48.38 0 1280747..1281085 + 112 157960885 - Spea_1057 - hypothetical protein 1056 43.05 0 1281133..1282419 + 428 157960886 - Spea_1058 - sodium/hydrogen exchanger 1057 45.04 0 1282497..1284470 - 657 157960887 - Spea_1059 - chorismate mutase 1058 41.32 -1 1284778..1285140 - 120 157960888 - Spea_1060 - sigma 54 modulation protein/ribosomal protein S30EA 1059 44.30 0 1285450..1286142 + 230 157960889 - Spea_1061 - cytochrome B561 1060 40.04 -1 1286241..1286702 - 153 157960890 - Spea_1062 - cytochrome c class II 1061 38.77 -1 1286927..1287202 + 91 157960891 - Spea_1063 - Trp operon repressor 1062 43.70 0 1287235..1287639 - 134 157960892 - Spea_1064 - hypothetical protein 1063 49.55 +1 1287793..1288452 - 219 157960893 - Spea_1065 - peptidylprolyl isomerase FKBP-type 1064 47.49 0 1289165..1291630 + 821 157960894 - Spea_1066 - bifunctional aspartokinase I/homeserine dehydrogenase I 1065 47.22 0 1291627..1292562 + 311 157960895 - Spea_1067 - homoserine kinase 1066 45.92 0 1292605..1293891 + 428 157960896 - Spea_1068 - threonine synthase 1067 46.39 0 1294161..1294451 + 96 157960897 - Spea_1069 - hypothetical protein 1068 46.78 0 1294467..1295321 - 284 157960898 - Spea_1070 - apurinic endonuclease Apn1 1069 40.76 -1 1295548..1296099 + 183 157960899 - Spea_1071 - hemerythrin HHE cation binding domain-containing protein 1070 43.01 0 1296160..1296345 - 61 157960900 - Spea_1072 - hypothetical protein 1071 44.81 0 1296964..1298601 - 545 157960901 - Spea_1073 - glucose-6-phosphate isomerase 1072 44.20 0 1298619..1299575 - 318 157960902 - Spea_1074 - transaldolase B 1073 46.17 0 1299860..1300957 - 365 157960903 - Spea_1075 - OmpA/MotB domain-containing protein 1074 46.68 0 1301193..1303559 - 788 157960904 - Spea_1076 - putative phosphoketolase 1075 46.15 0 1303980..1305461 + 493 157960905 - Spea_1077 - amino acid carrier protein 1076 44.44 0 1305567..1306340 + 257 157960906 - Spea_1078 - hypothetical protein 1077 37.46 -2 1306950..1307264 + 104 157960907 - Spea_1079 - ArsR family transcriptional regulator 1078 44.19 0 1307577..1307843 - 88 157960908 - Spea_1080 - 30S ribosomal protein S20 1079 44.29 0 1308099..1309658 + 519 157960909 - Spea_1081 - integral membrane protein MviN 1080 43.06 0 1309724..1310659 + 311 157960910 - Spea_1082 - riboflavin biosynthesis protein RibF 1081 45.31 0 1310691..1313513 + 940 157960911 - Spea_1083 - isoleucyl-tRNA synthetase 1082 42.50 0 1313634..1314146 + 170 157960912 - Spea_1084 - lipoprotein signal peptidase 1083 47.52 0 1314152..1314574 + 140 157960913 - Spea_1085 - peptidylprolyl isomerase FKBP-type 1084 47.96 0 1314577..1315506 + 309 157960914 - Spea_1086 - hydroxymethylbutenyl pyrophosphate reductase 1085 41.35 -1 1315749..1316309 + 186 157960915 - Spea_1087 - type IV pilus modification protein PilV 1086 43.33 0 1316314..1317303 + 329 157960916 - Spea_1088 - type IV pilus assembly protein PilW 1087 42.24 0 1317314..1317751 + 145 157960917 - Spea_1089 - type IV pilus assembly protein PilX 1088 43.04 0 1317754..1321338 + 1194 157960918 - Spea_1090 - type IV pilin biogenesis protein, putative 1089 39.19 -1 1321347..1321739 + 130 157960919 - Spea_1091 - methylation site containing protein 1090 38.49 -2 1321790..1322041 + 83 157960920 - Spea_1092 - hypothetical protein 1091 38.18 -2 1322086..1322622 - 178 157960921 - Spea_1093 - type IV pilus biogenesis protein, putative 1092 45.42 0 1322785..1323297 - 170 157960922 - Spea_1094 - type IV pilus biogenesis protein, putative 1093 39.53 -1 1323545..1323883 + 112 157960923 - Spea_1095 - nitrogen regulatory protein P-II 1094 43.07 0 1323979..1324995 - 338 157960924 - Spea_1096 - LacI family transcription regulator 1095 45.25 0 1325416..1328025 + 869 157960925 - Spea_1097 - TonB-dependent receptor 1096 45.51 0 1328192..1329718 + 508 157960926 - Spea_1098 - tryptophan halogenase 1097 40.74 -1 1329785..1330513 - 242 157960927 - Spea_1099 - SapC family protein 1098 46.89 0 1331282..1334002 + 906 157960928 - Spea_1100 - Beta-N-acetylhexosaminidase 1099 47.38 0 1334240..1335136 + 298 157960929 - Spea_1101 - ATPase BadF/BadG/BcrA/BcrD type 1100 48.50 +1 1335168..1336301 + 377 157960930 - Spea_1102 - N-acetylglucosamine-6-phosphate deacetylase 1101 44.64 0 1336417..1337601 + 394 157960931 - Spea_1103 - hypothetical protein 1102 44.52 0 1337892..1339205 + 437 157960932 - Spea_1104 - glucose/galactose transporter 1103 41.60 -1 1341198..1341596 + 132 157960933 - Spea_1105 - transposase 1104 39.71 -1 1341680..1342432 + 250 157960934 - Spea_1106 - integrase catalytic region 1105 40.50 -1 1343112..1343390 - 92 157960935 - Spea_1107 - hypothetical protein 1106 46.85 0 1343393..1344457 - 354 157960936 - Spea_1108 - A/G-specific adenine glycosylase 1107 46.78 0 1344730..1345443 + 237 157960937 - Spea_1109 - tRNA (guanine-N(7))-methyltransferase 1108 43.12 0 1345494..1345820 + 108 157960938 - Spea_1110 - hypothetical protein 1109 46.12 0 1345820..1346734 + 304 157960939 - Spea_1111 - glutaminase 1110 44.24 0 1346968..1347783 + 271 157960940 - Spea_1112 - hypothetical protein 1111 45.75 0 1348137..1349078 + 313 157960941 - Spea_1113 - LysR family transcriptional regulator 1112 42.08 0 1349870..1350886 + 338 157960942 - Spea_1114 - transposase IS116/IS110/IS902 family protein 1113 44.44 0 1351573..1351833 + 86 157960943 - Spea_1115 - hypothetical protein 1114 45.42 0 1352097..1354082 + 661 157960944 - Spea_1116 - hypothetical protein 1115 48.70 +1 1354169..1355326 - 385 157960945 - Spea_1117 - C4-dicarboxylate transporter/malic acid transport protein 1116 43.92 0 1355486..1356382 + 298 157960946 - Spea_1118 - LysR family transcriptional regulator 1117 45.87 0 1356467..1358125 - 552 157960947 - Spea_1119 - cytochrome bd ubiquinol oxidase subunit I 1118 47.51 0 1358352..1360235 - 627 157960948 - Spea_1120 - hypothetical protein 1119 47.41 0 1360391..1361527 - 378 157960949 - Spea_1121 - putative oxygen-independent coproporphyrinogen III oxidase 1120 47.33 0 1361527..1362126 - 199 157960950 - Spea_1122 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1121 41.61 -1 1362253..1362687 - 144 157960951 - Spea_1123 - hypothetical protein 1122 46.52 0 1362771..1363043 - 90 157960952 - Spea_1124 - hypothetical protein 1123 44.63 0 1363058..1363606 - 182 157960953 - Spea_1125 - protein of unknown function YGGT 1124 48.23 0 1363642..1364460 - 272 157960954 - Spea_1126 - pyrroline-5-carboxylate reductase 1125 49.72 +1 1364663..1365364 - 233 157960955 - Spea_1127 - alanine racemase domain-containing protein 1126 47.59 0 1365400..1366437 + 345 157960956 - Spea_1128 - twitching motility protein 1127 49.24 +1 1366461..1367573 + 370 157960957 - Spea_1129 - twitching motility protein 1128 49.70 +1 1367696..1368709 + 337 157960958 - Spea_1130 - ferrochelatase 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0