IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1024	 44.27	0	1250456..1250839	+	127	157960854	-	Spea_1026	-	hypothetical protein
1025	 42.35	0	1250909..1251817	+	302	157960855	-	Spea_1027	-	transcriptional activator NhaR
1026	 43.33	0	1251978..1252217	+	79	157960856	-	Spea_1028	-	hypothetical protein
1027	 43.41	0	1252198..1252614	+	138	157960857	-	Spea_1029	-	hypothetical protein
1028	 48.23	0	1252672..1254282	-	536	157960858	-	Spea_1030	-	L-aspartate oxidase
1029	 45.60	0	1254502..1255080	+	192	157960859	-	Spea_1031	-	RNA polymerase sigma factor RpoE
1030	 45.87	0	1255104..1255709	+	201	157960860	-	Spea_1032	-	anti sigma-E protein, RseA
1031	 47.27	0	1255722..1256654	+	310	157960861	-	Spea_1033	-	sigma E regulatory protein, MucB/RseB
1032	 43.87	0	1256668..1257132	+	154	157960862	-	Spea_1034	-	positive regulator of sigma E, RseC/MucC
1033	 43.66	0	1257261..1259051	+	596	157960863	-	Spea_1035	-	GTP-binding protein LepA
1034	 44.66	0	1259192..1260109	+	305	157960864	-	Spea_1036	-	signal peptida