IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
976	 46.38	0	1191649..1192713	-	354	157960806	-	Spea_0978	-	uncharacterized FlgJ-related protein-like protein
977	 46.23	0	1193085..1193495	-	136	157960807	-	Spea_0979	-	cytochrome c class I
978	 47.44	0	1193497..1193886	-	129	157960808	-	Spea_0980	-	hypothetical protein
979	 48.66	+1	1193886..1195112	-	408	157960809	-	Spea_0981	-	oxidoreductase molybdopterin binding
980	 43.30	0	1195112..1195432	-	106	157960810	-	Spea_0982	-	cytochrome c class I
981	 45.99	0	1196074..1197795	-	573	157960811	-	Spea_0983	-	chloride channel core
982	 44.15	0	1197857..1198660	+	267	157960812	-	Spea_0984	-	hypothetical protein
983	 45.30	0	1198653..1199003	+	116	157960813	-	Spea_0985	-	iron-sulfur cluster insertion protein ErpA
984	 44.53	0	1199079..1199471	-	130	157960814	-	Spea_0986	-	hypothetical protein
985	 43.57	0	1199704..1200084	-	126	157960815	-	Spea_0987	-	hypothetical protein
986	 50.28	+1	1200210..1200917	-	235	157960816	-	Spea_0988	-	aquaporin Z
987	 49.00	+1	1201053..1202495	-	480	157960817	-	Spea_0989	-	alkaline phosphatase
988	 48.08	0	1202509..1205031	-	840	157960818	-	Spea_0990	-	peptidase S9 prolyl oligopeptidase
989	 45.46	0	1205124..1207901	-	925	157960819	-	Spea_0991	-	TonB-dependent receptor
990	 46.60	0	1208255..1210402	+	715	157960820	-	Spea_0992	-	winged helix family two component response transcriptional regulator
991	 50.54	+1	1210630..1211739	-	369	157960821	-	Spea_0993	-	anhydro-N-acetylmuramic acid kinase
992	 45.44	0	1211799..1213211	-	470	157960822	-	Spea_0994	-	peptidase M23B
993	 46.70	0	1213339..1214535	+	398	157960823	-	Spea_0995	-	tyrosyl-tRNA synthetase
994	 46.23	0	1214613..1215023	-	136	157960824	-	Spea_0996	-	hypothetical protein
995	 45.00	0	1215242..1215721	-	159	157960825	-	Spea_0997	-	hypothetical protein
996	 47.60	0	1215721..1216344	-	207	157960826	-	Spea_0998	-	hypothetical protein
997	 41.54	-1	1216341..1216730	-	129	157960827	-	Spea_0999	-	hypothetical protein
998	 47.81	0	1216887..1217867	-	326	157960828	-	Spea_1000	-	cobalamin biosynthesis protein CbiB
999	 47.33	0	1217954..1218646	-	230	157960829	-	Spea_1001	-	adenosylhomocysteine nucleosidase
1000	 39.34	-1	1219028..1220359	+	443	157960830	-	Spea_1002	-	diguanylate cyclase
1001	 48.90	+1	1220434..1220889	+	151	157960831	-	Spea_1003	-	GCN5-related N-acetyltransferase
1002	 47.47	0	1220902..1221375	-	157	157960832	-	Spea_1004	-	MarR family transcriptional regulator
1003	 47.52	0	1221568..1222272	-	234	157960833	-	Spea_1005	-	hypothetical protein
1004	 46.88	0	1222292..1223509	-	405	157960834	-	Spea_1006	-	putative transporter, BCCT family protein
1005	 49.71	+1	1223842..1225539	-	565	157960835	-	Spea_1007	-	choline dehydrogenase
1006	 50.48	+1	1225549..1227012	-	487	157960836	-	Spea_1008	-	betaine aldehyde dehydrogenase
1007	 49.01	+1	1227003..1227608	-	201	157960837	-	Spea_1009	-	transcriptional regulator BetI
1008	 42.87	0	1228104..1229078	+	324	157960838	-	Spea_1010	-	inosine/uridine-preferring nucleoside hydrolase
1009	 42.19	0	1229331..1230527	-	398	157960839	-	Spea_1011	-	ribokinase-like domain-containing protein
1010	 50.92	+1	1230944..1232353	-	469	157960840	-	Spea_1012	-	glutamate synthase subunit beta
1011	 49.36	+1	1232360..1236808	-	1482	157960841	-	Spea_1013	-	glutamate synthase subunit alpha
1012	 46.13	0	1237298..1238227	+	309	157960842	-	Spea_1014	-	putative radical SAM protein
1013	 42.08	0	1238430..1238795	+	121	157960843	-	Spea_1015	-	Hpt protein
1014	 44.23	0	1238980..1239915	+	311	157960844	-	Spea_1016	-	LysR family transcriptional regulator
1015	 43.62	0	1240325..1241053	-	242	157960845	-	Spea_1017	-	integrase catalytic region
1016	 41.41	-1	1241170..1241553	-	127	157960846	-	Spea_1018	-	transposase
1017	 44.32	0	1241646..1242719	-	357	157960847	-	Spea_1019	-	putative adenylate/guanylate cyclase
1018	 45.83	0	1242845..1243516	-	223	157960848	-	Spea_1020	-	DNA mismatch repair protein
1019	 43.87	0	1244208..1244729	+	173	157960849	-	Spea_1021	-	dinucleoside polyphosphate hydrolase
1020	 46.40	0	1244748..1246982	+	744	157960850	-	Spea_1022	-	phosphoenolpyruvate-protein phosphotransferase PtsP
1021	 47.69	0	1247057..1247857	+	266	157960851	-	Spea_1023	-	hypothetical protein
1022	 43.54	0	1247941..1248792	+	283	157960852	-	Spea_1024	-	thymidylate synthase
1023	 44.30	0	1249284..1250459	+	391	157960853	-	Spea_1025	-	Na+/H+ antiporter NhaA
1024	 44.27	0	1250456..1250839	+	127	157960854	-	Spea_1026	-	hypothetical protein
1025	 42.35	0	1250909..1251817	+	302	157960855	-	Spea_1027	-	transcriptional activator NhaR
1026	 43.33	0	1251978..1252217	+	79	157960856	-	Spea_1028	-	hypothetical protein
1027	 43.41	0	1252198..1252614	+	138	157960857	-	Spea_1029	-	hypothetical protein
1028	 48.23	0	1252672..1254282	-	536	157960858	-	Spea_1030	-	L-aspartate oxidase
1029	 45.60	0	1254502..1255080	+	192	157960859	-	Spea_1031	-	RNA polymerase sigma factor RpoE
1030	 45.87	0	1255104..1255709	+	201	157960860	-	Spea_1032	-	anti sigma-E protein, RseA
1031	 47.27	0	1255722..1256654	+	310	157960861	-	Spea_1033	-	sigma E regulatory protein, MucB/RseB
1032	 43.87	0	1256668..1257132	+	154	157960862	-	Spea_1034	-	positive regulator of sigma E, RseC/MucC
1033	 43.66	0	1257261..1259051	+	596	157960863	-	Spea_1035	-	GTP-binding protein LepA
1034	 44.66	0	1259192..1260109	+	305	157960864	-	Spea_1036	-	signal peptidase I
1035	 43.81	0	1260111..1260788	+	225	157960865	-	Spea_1037	-	ribonuclease III
1036	 45.52	0	1260785..1261777	+	330	157960866	-	Spea_1038	-	GTP-binding protein Era
1037	 46.38	0	1261937..1262626	+	229	157960867	-	Spea_1039	-	DNA repair protein RecO
1038	 47.70	0	1262750..1263487	+	245	157960868	-	Spea_1040	-	pyridoxal phosphate biosynthetic protein PdxJ
1039	 48.74	+1	1263587..1263982	+	131	157960869	-	Spea_1041	-	holo-acyl-carrier-protein synthase
1040	 43.15	0	1263996..1264484	-	162	157960870	-	Spea_1042	-	GCN5-related N-acetyltransferase
1041	 43.95	0	1264914..1265855	-	313	157960871	-	Spea_1043	-	Dyp-type peroxidase family protein
1042	 42.97	0	1266453..1267511	+	352	157960872	-	Spea_1044	-	hypothetical protein
1043	 41.57	-1	1267843..1268376	+	177	157960873	-	Spea_1045	-	hypothetical protein
1044	 44.31	0	1268473..1269756	-	427	157960874	-	Spea_1046	-	hypothetical protein
1045	 46.13	0	1269902..1270690	-	262	157960875	-	Spea_1047	-	cytochrome c assembly protein
1046	 47.45	0	1271098..1272471	+	457	157960876	-	Spea_1048	-	signal recognition particle protein
1047	 48.81	+1	1272689..1272940	+	83	157960877	-	Spea_1049	-	30S ribosomal protein S16
1048	 44.26	0	1272961..1273491	+	176	157960878	-	Spea_1050	-	16S rRNA-processing protein
1049	 47.12	0	1273507..1274253	+	248	157960879	-	Spea_1051	-	tRNA (guanine-N(1)-)-methyltransferase
1050	 46.05	0	1274290..1274643	+	117	157960880	-	Spea_1052	-	50S ribosomal protein L19
1051	 46.34	0	1275021..1276112	+	363	157960881	-	Spea_1053	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1052	 46.06	0	1276112..1277266	+	384	157960882	-	Spea_1054	-	bifunctional chorismate mutase/prephenate dehydrogenase
1053	 45.17	0	1277672..1279336	+	554	157960883	-	Spea_1055	-	hydroxylamine reductase
1054	 45.87	0	1279439..1280563	+	374	157960884	-	Spea_1056	-	oxidoreductase FAD-binding subunit
1055	 48.38	0	1280747..1281085	+	112	157960885	-	Spea_1057	-	hypothetical protein
1056	 43.05	0	1281133..1282419	+	428	157960886	-	Spea_1058	-	sodium/hydrogen exchanger
1057	 45.04	0	1282497..1284470	-	657	157960887	-	Spea_1059	-	chorismate mutase
1058	 41.32	-1	1284778..1285140	-	120	157960888	-	Spea_1060	-	sigma 54 modulation protein/ribosomal protein S30EA
1059	 44.30	0	1285450..1286142	+	230	157960889	-	Spea_1061	-	cytochrome B561
1060	 40.04	-1	1286241..1286702	-	153	157960890	-	Spea_1062	-	cytochrome c class II
1061	 38.77	-1	1286927..1287202	+	91	157960891	-	Spea_1063	-	Trp operon repressor
1062	 43.70	0	1287235..1287639	-	134	157960892	-	Spea_1064	-	hypothetical protein
1063	 49.55	+1	1287793..1288452	-	219	157960893	-	Spea_1065	-	peptidylprolyl isomerase FKBP-type
1064	 47.49	0	1289165..1291630	+	821	157960894	-	Spea_1066	-	bifunctional aspartokinase I/homeserine dehydrogenase I
1065	 47.22	0	1291627..1292562	+	311	157960895	-	Spea_1067	-	homoserine kinase
1066	 45.92	0	1292605..1293891	+	428	157960896	-	Spea_1068	-	threonine synthase
1067	 46.39	0	1294161..1294451	+	96	157960897	-	Spea_1069	-	hypothetical protein
1068	 46.78	0	1294467..1295321	-	284	157960898	-	Spea_1070	-	apurinic endonuclease Apn1
1069	 40.76	-1	1295548..1296099	+	183	157960899	-	Spea_1071	-	hemerythrin HHE cation binding domain-containing protein
1070	 43.01	0	1296160..1296345	-	61	157960900	-	Spea_1072	-	hypothetical protein
1071	 44.81	0	1296964..1298601	-	545	157960901	-	Spea_1073	-	glucose-6-phosphate isomerase
1072	 44.20	0	1298619..1299575	-	318	157960902	-	Spea_1074	-	transaldolase B
1073	 46.17	0	1299860..1300957	-	365	157960903	-	Spea_1075	-	OmpA/MotB domain-containing protein
1074	 46.68	0	1301193..1303559	-	788	157960904	-	Spea_1076	-	putative phosphoketolase
1075	 46.15	0	1303980..1305461	+	493	157960905	-	Spea_1077	-	amino acid carrier protein
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.