IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
952	 43.54	0	1164302..1164634	+	110	157960782	-	Spea_0954	-	hypothetical protein
953	 44.14	0	1164638..1166044	+	468	157960783	-	Spea_0955	-	cytochrome c oxidase, cbb3-type, subunit I
954	 47.64	0	1166037..1166651	+	204	157960784	-	Spea_0956	-	cytochrome C oxidase mono-heme subunit/FixO
955	 44.43	0	1166653..1168824	+	723	157960785	-	Spea_0957	-	gluconate 2-dehydrogenase (acceptor)
956	 44.46	0	1169239..1171089	-	616	157960786	-	Spea_0958	-	RNA polymerase, sigma 70 subunit, RpoD
957	 44.95	0	1171207..1172937	-	576	157960787	-	Spea_0959	-	DNA primase
958	 46.40	0	1173075..1173518	-	147	157960788	-	Spea_0960	-	GatB/YqeY domain-containing protein
959	 46.30	0	1173526..1173741	-	71	157960789	-	Spea_0961	-	30S ribosomal protein S21
960	 49.85	+1	1173970..1174986	+	338	157960790	-	Spea_0962	-	metalloendopeptidase glycoprotease family
961	 46.81	0	1175061..1175735	-	224	157960791	-	Spea_0963	-	2OG-Fe(II) oxygenase
962	 51.66	+1	1176000..1176572	-	190	157960792	-	Spea_0964	-	putative glycerol-3-phosphate acyltransferase PlsY
963	 44.63	0	1176911..1177264	+	117	157960793	-	Spea_0965	-	dihydroneopterin aldolase
964	 44.31	0	1177265..1177756	+	163	157960794	-	Spea_0966	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
965	 46.44	0	1177781..1178581	+	266	157960795	-	Spea_0967	-	undecaprenyl pyrophosphate phosphatase
966	 45.80	0	1178635..1179468	+	277	157960796	-	Spea_0968	-	rRNA (guanine-N(1)-)-methyltransferase
967	 49.12	+1	1179521..1180432	+	303	157960797	-	Spea_0969	-	ErfK/YbiS/YcfS/YnhG family protein
968	 43.82	0	1180629..1180895	-	88	157960798	-	Spea_0970	-	major outer membrane lipoprotein, putative
969	 48.10	0	1181112..1182350	-	412	157960799	-	Spea_0971	-	polynucleotide adenylyltransferase/metal dependent phosphohydrolase
970	 47.29	0	1182757..1184433	+	558	157960800	-	Spea_0972	-	peptidoglycan binding domain-containing protein
971	 49.40	+1	1184433..1185509	+	358	157960801	-	Spea_0973	-	general secretion pathway protein B
972	 47.36	0	1185605..1186894	-	429	157960802	-	Spea_0974	-	glutamate-1-semialdehyde-2,1-aminomutase
973	 45.39	0	1186922..1187941	-	339	157960803	-	Spea_0975	-	aspartate carbamoyltransferase
974	 46.32	0	1188205..1189020	+	271	157960804	-	Spea_0976	-	prolipoprotein diacylglyceryl transferase
975	 46.87	0	1189129..1191285	-	718	157960805	-	Spea_0977	-	TonB-dependent receptor
976	 46.38	0	1191649..1192713	-	354	157960806	-	Spea_0978	-	uncharacterized FlgJ-related protein-like protein
977	 46.23	0	1193085..1193495	-	136	157960807	-	Spea_0979	-	cytochrome c class I
978	 47.44	0	1193497..1193886	-	129	157960808	-	Spea_0980	-	hypothetical protein
979	 48.66	+1	1193886..1195112	-	408	157960809	-	Spea_0981	-	oxidoreductase molybdopterin binding
980	 43.30	0	1195112..1195432	-	106	157960810	-	Spea_0982	-	cytochrome c class I
981	 45.99	0	1196074..1197795	-	573	157960811	-	Spea_0983	-	chloride channel core
982	 44.15	0	1197857..1198660	+	267	157960812	-	Spea_0984	-	hypothetical protein
983	 45.30	0	1198653..1199003	+	116	157960813	-	Spea_0985	-	iron-sulfur cluster insertion protein ErpA
984	 44.53	0	1199079..1199471	-	130	157960814	-	Spea_0986	-	hypothetical protein
985	 43.57	0	1199704..1200084	-	126	157960815	-	Spea_0987	-	hypothetical protein
986	 50.28	+1	1200210..1200917	-	235	157960816	-	Spea_0988	-	aquaporin Z
987	 49.00	+1	1201053..1202495	-	480	157960817	-	Spea_0989	-	alkaline phosphatase
988	 48.08	0	1202509..1205031	-	840	157960818	-	Spea_0990	-	peptidase S9 prolyl oligopeptidase
989	 45.46	0	1205124..1207901	-	925	157960819	-	Spea_0991	-	TonB-dependent receptor
990	 46.60	0	1208255..1210402	+	715	157960820	-	Spea_0992	-	winged helix family two component response transcriptional regulator
991	 50.54	+1	1210630..1211739	-	369	157960821	-	Spea_0993	-	anhydro-N-acetylmuramic acid kinase
992	 45.44	0	1211799..1213211	-	470	157960822	-	Spea_0994	-	peptidase M23B
993	 46.70	0	1213339..1214535	+	398	157960823	-	Spea_0995	-	tyrosyl-tRNA synthetase
994	 46.23	0	1214613..1215023	-	136	157960824	-	Spea_0996	-	hypothetical protein
995	 45.00	0	1215242..1215721	-	159	157960825	-	Spea_0997	-	hypothetical protein
996	 47.60	0	1215721..1216344	-	207	157960826	-	Spea_0998	-	hypothetical protein
997	 41.54	-1	1216341..1216730	-	129	157960827	-	Spea_0999	-	hypothetical protein
998	 47.81	0	1216887..1217867	-	326	157960828	-	Spea_1000	-	cobalamin biosynthesis protein CbiB
999	 47.33	0	1217954..1218646	-	230	157960829	-	Spea_1001	-	adenosylhomocysteine nucleosidase
1000	 39.34	-1	1219028..1220359	+	443	157960830	-	Spea_1002	-	diguanylate cyclase
1001	 48.90	+1	1220434..1220889	+	151	157960831	-	Spea_1003	-	GCN5-related N-acetyltransferase
1002	 47.47	0	1220902..1221375	-	157	157960832	-	Spea_1004	-	MarR family transcriptional regulator
1003	 47.52	0	1221568..1222272	-	234	157960833	-	Spea_1005	-	hypothetical protein
1004	 46.88	0	1222292..1223509	-	405	157960834	-	Spea_1006	-	putative transporter, BCCT family protein
1005	 49.71	+1	1223842..1225539	-	565	157960835	-	Spea_1007	-	choline dehydrogenase
1006	 50.48	+1	1225549..1227012	-	487	157960836	-	Spea_1008	-	betaine aldehyde dehydrogenase
1007	 49.01	+1	1227003..1227608	-	201	157960837	-	Spea_1009	-	transcriptional regulator BetI
1008	 42.87	0	1228104..1229078	+	324	157960838	-	Spea_1010	-	inosine/uridine-preferring nucleoside hydrolase
1009	 42.19	0	1229331..1230527	-	398	157960839	-	Spea_1011	-	ribokinase-like domain-containing protein
1010	 50.92	+1	1230944..1232353	-	469	157960840	-	Spea_1012	-	glutamate synthase subunit beta
1011	 49.36	+1	1232360..1236808	-	1482	157960841	-	Spea_1013	-	glutamate synthase subunit alpha
1012	 46.13	0	1237298..1238227	+	309	157960842	-	Spea_1014	-	putative radical SAM protein
1013	 42.08	0	1238430..1238795	+	121	157960843	-	Spea_1015	-	Hpt protein
1014	 44.23	0	1238980..1239915	+	311	157960844	-	Spea_1016	-	LysR family transcriptional regulator
1015	 43.62	0	1240325..1241053	-	242	157960845	-	Spea_1017	-	integrase catalytic region
1016	 41.41	-1	1241170..1241553	-	127	157960846	-	Spea_1018	-	transposase
1017	 44.32	0	1241646..1242719	-	357	157960847	-	Spea_1019	-	putative adenylate/guanylate cyclase
1018	 45.83	0	1242845..1243516	-	223	157960848	-	Spea_1020	-	DNA mismatch repair protein
1019	 43.87	0	1244208..1244729	+	173	157960849	-	Spea_1021	-	dinucleoside polyphosphate hydrolase
1020	 46.40	0	1244748..1246982	+	744	157960850	-	Spea_1022	-	phosphoenolpyruvate-protein phosphotransferase PtsP
1021	 47.69	0	1247057..1247857	+	266	157960851	-	Spea_1023	-	hypothetical protein
1022	 43.54	0	1247941..1248792	+	283	157960852	-	Spea_1024	-	thymidylate synthase
1023	 44.30	0	1249284..1250459	+	391	157960853	-	Spea_1025	-	Na+/H+ antiporter NhaA
1024	 44.27	0	1250456..1250839	+	127	157960854	-	Spea_1026	-	hypothetical protein
1025	 42.35	0	1250909..1251817	+	302	157960855	-	Spea_1027	-	transcriptional activator NhaR
1026	 43.33	0	1251978..1252217	+	79	157960856	-	Spea_1028	-	hypothetical protein
1027	 43.41	0	1252198..1252614	+	138	157960857	-	Spea_1029	-	hypothetical protein
1028	 48.23	0	1252672..1254282	-	536	157960858	-	Spea_1030	-	L-aspartate oxidase
1029	 45.60	0	1254502..1255080	+	192	157960859	-	Spea_1031	-	RNA polymerase sigma factor RpoE
1030	 45.87	0	1255104..1255709	+	201	157960860	-	Spea_1032	-	anti sigma-E protein, RseA
1031	 47.27	0	1255722..1256654	+	310	157960861	-	Spea_1033	-	sigma E regulatory protein, MucB/RseB
1032	 43.87	0	1256668..1257132	+	154	157960862	-	Spea_1034	-	positive regulator of sigma E, RseC/MucC
1033	 43.66	0	1257261..1259051	+	596	157960863	-	Spea_1035	-	GTP-binding protein LepA
1034	 44.66	0	1259192..1260109	+	305	157960864	-	Spea_1036	-	signal peptidase I
1035	 43.81	0	1260111..1260788	+	225	157960865	-	Spea_1037	-	ribonuclease III
1036	 45.52	0	1260785..1261777	+	330	157960866	-	Spea_1038	-	GTP-binding protein Era
1037	 46.38	0	1261937..1262626	+	229	157960867	-	Spea_1039	-	DNA repair protein RecO
1038	 47.70	0	1262750..1263487	+	245	157960868	-	Spea_1040	-	pyridoxal phosphate biosynthetic protein PdxJ
1039	 48.74	+1	1263587..1263982	+	131	157960869	-	Spea_1041	-	holo-acyl-carrier-protein synthase
1040	 43.15	0	1263996..1264484	-	162	157960870	-	Spea_1042	-	GCN5-related N-acetyltransferase
1041	 43.95	0	1264914..1265855	-	313	157960871	-	Spea_1043	-	Dyp-type peroxidase family protein
1042	 42.97	0	1266453..1267511	+	352	157960872	-	Spea_1044	-	hypothetical protein
1043	 41.57	-1	1267843..1268376	+	177	157960873	-	Spea_1045	-	hypothetical protein
1044	 44.31	0	1268473..1269756	-	427	157960874	-	Spea_1046	-	hypothetical protein
1045	 46.13	0	1269902..1270690	-	262	157960875	-	Spea_1047	-	cytochrome c assembly protein
1046	 47.45	0	1271098..1272471	+	457	157960876	-	Spea_1048	-	signal recognition particle protein
1047	 48.81	+1	1272689..1272940	+	83	157960877	-	Spea_1049	-	30S ribosomal protein S16
1048	 44.26	0	1272961..1273491	+	176	157960878	-	Spea_1050	-	16S rRNA-processing protein
1049	 47.12	0	1273507..1274253	+	248	157960879	-	Spea_1051	-	tRNA (guanine-N(1)-)-methyltransferase
1050	 46.05	0	1274290..1274643	+	117	157960880	-	Spea_1052	-	50S ribosomal protein L19
1051	 46.34	0	1275021..1276112	+	363	157960881	-	Spea_1053	-	phospho-2-dehydro-3-deoxyheptonate aldolase
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.