version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 921 42.35 0 1093456..1094043 + 195 114562109 - Sfri_0931 - hypothetical protein 922 38.84 -1 1094062..1094805 - 247 114562110 - Sfri_0932 - hypothetical protein 923 39.38 0 1094857..1095501 - 214 114562111 - Sfri_0933 - hypothetical protein 924 38.51 -1 1095658..1096236 - 192 114562112 - Sfri_0934 - hypothetical protein 925 44.44 0 1096427..1096741 + 104 114562113 - Sfri_0935 - hypothetical protein 926 40.90 0 1096751..1097371 - 206 114562114 - Sfri_0936 - transcriptional regulator, TetR family protein 927 43.39 0 1097501..1098922 - 473 114562115 - Sfri_0937 - aldehyde dehydrogenase 928 40.97 0 1099180..1099611 + 143 114562116 - Sfri_0938 - UspA domain-containing protein 929 41.89 0 1099651..1100211 - 186 114562117 - Sfri_0939 - hypothetical protein 930 40.34 0 1100216..1101841 - 541 114562118 - Sfri_0940 - membrane-flanked domain-containing protein 931 42.52 0 1101888..1102616 - 242 114562119 - Sfri_0941 - membrane-flanked domain-containing protein 932 39.76 0 1102870..1103196 + 108 114562120 - Sfri_0942 - hypothetical protein 933 39.73 0 1103238..1104206 + 322 114562121 - Sfri_0943 - Mg2 transporter protein, CorA family protein 934 45.00 0 1104237..1104896 + 219 114562122 - Sfri_0944 - 2OG-Fe(II) oxygenase 935 43.00 0 1105169..1105468 + 99 114562123 - Sfri_0945 - BolA family protein 936 44.27 0 1105633..1106757 + 374 114562124 - Sfri_0946 - TRAP dicarboxylate transporter- DctP subunit 937 40.20 0 1106845..1107354 + 169 114562125 - Sfri_0947 - S-ribosylhomocysteinase 938 42.82 0 1107557..1109632 + 691 114562126 - Sfri_0948 - TonB-dependent receptor domain-containing protein 939 45.17 0 1110090..1111424 + 444 114562127 - Sfri_0949 - Na(+)-translocating NADH-quinone reductase subunit A 940 44.67 0 1111424..1112623 + 399 114562128 - Sfri_0950 - Na(+)-translocating NADH-quinone reductase subunit B 941 41.48 0 1112616..1113401 + 261 114562129 - Sfri_0951 - Na(+)-translocating NADH-quinone reductase subunit C 942 41.23 0 1113401..1114033 + 210 114562130 - Sfri_0952 - Na(+)-translocating NADH-quinone reductase subunit D 943 41.71 0 1114039..1114647 + 202 114562131 - Sfri_0953 - Na(+)-translocating NADH-quinone reductase subunit E 944 42.15 0 1114694..1115941 + 415 114562132 - Sfri_0954 - Na(+)-translocating NADH-quinone reductase subunit F 945 40.93 0 1116063..1117076 + 337 114562133 - Sfri_0955 - ApbE family lipoprotein 946 37.33 -1 1117162..1117386 + 74 114562134 - Sfri_0956 - hypothetical protein 947 38.22 -1 1117620..1118090 + 156 114562135 - Sfri_0957 - bacterioferritin 948 38.46 -1 1118103..1118570 + 155 114562136 - Sfri_0958 - bacterioferritin 949 31.65 -2 1118895..1119368 + 157 114562137 - Sfri_0959 - hypothetical protein 950 30.83 -2 1119370..1119888 + 172 114562138 - Sfri_0960 - ankyrin 951 43.80 0 1120087..1121166 + 359 114562139 - Sfri_0961 - DNA polymerase IV 952 42.90 0 1121276..1122739 - 487 114562140 - Sfri_0962 - aminoacyl-histidine dipeptidase 953 45.81 +1 1122922..1124460 + 512 114562141 - Sfri_0963 - peptidase M17, leucyl aminopeptidase domain-containing protein 954 40.00 0 1124724..1124903 + 59 114562142 - Sfri_0964 - hypothetical protein 955 41.94 0 1125346..1126635 + 429 114562143 - Sfri_0965 - xanthine/uracil/vitamin C permease 956 44.68 0 1126919..1128028 + 369 114562144 - Sfri_0966 - gamma-glutamyl kinase 957 44.08 0 1128039..1129313 + 424 114562145 proA Sfri_0967 - gamma-glutamyl phosphate reductase 958 36.90 -1 1129396..1129731 - 111 114562146 - Sfri_0968 - hypothetical protein 959 41.63 0 1130511..1132427 + 638 114562147 - Sfri_0969 - chaperone protein DnaK 960 45.45 +1 1132539..1133669 + 376 114562148 - Sfri_0970 - chaperone protein DnaJ 961 45.01 0 1133772..1135004 + 410 114562149 - Sfri_0971 - DEAD/DEAH box helicase domain-containing protein 962 46.59 +1 1135127..1135933 + 268 114562150 - Sfri_0972 - peptidase M48, Ste24p 963 45.95 +1 1136013..1136630 + 205 114562151 - Sfri_0973 - peptidylprolyl isomerase, FKBP-type 964 44.77 0 1136714..1137526 + 270 114562152 - Sfri_0974 - dihydrodipicolinate reductase 965 43.89 0 1137713..1138858 + 381 114562153 - Sfri_0975 - carbamoyl phosphate synthase small subunit 966 43.61 0 1138882..1142103 + 1073 114562154 carB Sfri_0976 - carbamoyl phosphate synthase large subunit 967 39.83 0 1142334..1142810 + 158 114562155 - Sfri_0977 - transcription elongation factor GreA 968 39.78 0 1143257..1143892 + 211 114562156 - Sfri_0978 - hypothetical protein 969 42.72 0 1144029..1145840 + 603 114562157 secD Sfri_0979 - preprotein translocase subunit SecD 970 41.56 0 1145845..1146768 + 307 114562158 secF Sfri_0980 - preprotein translocase subunit SecF 971 41.00 0 1146836..1147135 - 99 114562159 - Sfri_0981 - hypothetical protein 972 44.60 0 1147226..1147855 + 209 114562160 rrmJ Sfri_0982 - 23S rRNA methyltransferase J 973 42.55 0 1147902..1149875 + 657 114562161 - Sfri_0983 - ATP-dependent metalloprotease FtsH 974 44.44 0 1149915..1150778 + 287 114562162 - Sfri_0984 - dihydropteroate synthase 975 43.72 0 1150833..1152170 + 445 114562163 - Sfri_0985 - phosphoglucosamine mutase 976 44.57 0 1152310..1153092 + 260 114562164 - Sfri_0986 - Triose-phosphate isomerase 977 43.45 0 1153097..1153432 + 111 114562165 secG Sfri_0987 - preprotein translocase subunit SecG 978 38.96 -1 1153817..1154314 + 165 114562166 - Sfri_0988 - hypothetical protein 979 43.80 0 1154346..1155845 + 499 114562167 nusA Sfri_0989 - transcription elongation factor NusA 980 43.80 0 1155871..1158516 + 881 114562168 infB Sfri_0990 - translation initiation factor IF-2 981 40.97 0 1158583..1159014 + 143 114562169 rbfA Sfri_0991 - ribosome-binding factor A 982 42.87 0 1159014..1159967 + 317 114562170 - Sfri_0992 - tRNA pseudouridine synthase B 983 41.11 0 1160109..1160378 + 89 114562171 rpsO Sfri_0993 - 30S ribosomal protein S15 984 38.88 -1 1161509..1163545 - 678 114562172 - Sfri_0994 - diguanylate cyclase/phosphodiesterase 985 42.30 0 1163942..1166038 + 698 114562173 - Sfri_0995 - polynucleotide phosphorylase/polyadenylase 986 39.69 0 1166185..1167096 + 303 114562174 - Sfri_0996 - lipoprotein NlpI 987 41.94 0 1167173..1168753 + 526 114562175 prfC Sfri_0997 - peptide chain release factor 3 988 35.82 -2 1168835..1169035 + 66 114562176 - Sfri_0998 - hypothetical protein 989 37.93 -1 1169028..1169789 + 253 114562177 - Sfri_0999 - TatD-related deoxyribonuclease 990 40.38 0 1169967..1171229 + 420 114562178 - Sfri_1000 - nucleoside transporter 991 40.83 0 1171592..1172431 + 279 114562179 - Sfri_1001 - nucleoside-specific channel-forming protein, Tsx 992 40.57 0 1172811..1173584 + 257 114562180 - Sfri_1002 - deoxyribose-phosphate aldolase 993 43.02 0 1173712..1175043 + 443 114562181 deoA Sfri_1003 - thymidine phosphorylase 994 42.12 0 1175056..1176273 + 405 114562182 - Sfri_1004 - phosphopentomutase 995 40.79 0 1176375..1177085 + 236 114562183 deoD Sfri_1005 - purine nucleoside phosphorylase 996 37.37 -1 1177161..1177853 - 230 114562184 - Sfri_1006 - membrane protein 997 41.03 0 1178016..1179002 + 328 114562185 - Sfri_1007 - phosphoserine phosphatase SerB 998 41.80 0 1179121..1180029 + 302 114562186 - Sfri_1008 - hypothetical protein 999 38.20 -1 1180179..1182563 - 794 114562187 - Sfri_1009 - type IV pilus assembly PilZ 1000 41.67 0 1182995..1184374 + 459 114562188 - Sfri_1010 - DNA repair protein RadA 1001 40.44 0 1184464..1184829 - 121 114562189 - Sfri_1011 - type IV pilus assembly PilZ 1002 39.39 0 1184987..1186339 - 450 114562190 - Sfri_1012 - nucleoside recognition domain-containing protein 1003 41.61 0 1186708..1187649 - 313 114562191 - Sfri_1013 - peptidase U32 1004 45.51 +1 1187659..1188660 - 333 114562192 - Sfri_1014 - peptidase U32 1005 41.37 0 1188801..1189298 + 165 114562193 - Sfri_1015 - hypothetical protein 1006 47.02 +1 1189402..1189569 - 55 114562194 - Sfri_1016 - ferredoxin, 4Fe-4S 1007 44.56 0 1189733..1191193 - 486 114562195 - Sfri_1017 - Ig-like, group 2 1008 44.53 0 1191486..1194164 - 892 114562196 - Sfri_1018 - Ig domain-containing protein 1009 45.36 +1 1194719..1197328 + 869 114562197 - Sfri_1019 - PAS/PAC sensor hybrid histidine kinase 1010 43.26 0 1197328..1198878 + 516 114562198 - Sfri_1020 - two component, sigma54 specific, transcriptional regulator, Fis family protein 1011 45.35 +1 1199071..1199328 - 85 114562199 - Sfri_1021 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1012 43.00 0 1199341..1200705 - 454 114562200 - Sfri_1022 - peptidase U32 1013 43.06 0 1200953..1201795 + 280 114562201 - Sfri_1023 - putative signal transduction protein 1014 37.46 -1 1201920..1203422 + 500 114562202 - Sfri_1024 - diguanylate cyclase/phosphodiesterase 1015 41.44 0 1203488..1203919 - 143 114562203 - Sfri_1025 - thioesterase superfamily protein 1016 37.52 -1 1203954..1204766 - 270 114562204 - Sfri_1026 - amino acid ABC transporter 1017 40.04 0 1205109..1208939 - 1276 114562205 - Sfri_1027 - diguanylate cyclase/phosphodiesterase 1018 44.09 0 1209463..1209936 - 157 114562206 - Sfri_1028 - hypothetical protein 1019 43.19 0 1209954..1213058 - 1034 114562207 - Sfri_1029 - acriflavin resistance protein 1020 43.44 0 1213058..1214155 - 365 114562208 - Sfri_1030 - RND family efflux transporter MFP subunit 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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