version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 892 43.73 0 1061855..1063210 + 451 114562080 - Sfri_0902 - periplasmic sensor signal transduction histidine kinase 893 44.32 0 1063461..1064270 - 269 114562081 - Sfri_0903 - hypothetical protein 894 43.88 0 1064273..1065211 - 312 114562082 - Sfri_0904 - hypothetical protein 895 44.88 0 1065336..1065794 - 152 114562083 - Sfri_0905 - putative lipoprotein 896 43.49 0 1066181..1066564 + 127 114562084 - Sfri_0906 - hypothetical protein 897 43.90 0 1066679..1066924 - 81 114562085 - Sfri_0907 - hypothetical protein 898 43.80 0 1067012..1067632 + 206 114562086 - Sfri_0908 - uracil-DNA glycosylase superfamily protein 899 36.53 -1 1067675..1068175 - 166 114562087 - Sfri_0909 - hypothetical protein 900 40.85 0 1068323..1070971 - 882 114562088 - Sfri_0910 - UTP-GlnB uridylyltransferase, GlnD 901 40.76 0 1071053..1071766 + 237 114562089 - Sfri_0911 - pseudouridine synthase, Rsu 902 39.39 0 1071831..1072787 + 318 114562090 - Sfri_0912 - transcriptional regulator, LysR family protein 903 43.71 0 1073125..1075437 + 770 114562091 - Sfri_0913 - decaheme cytochrome c 904 43.62 0 1076067..1077602 - 511 114562092 - Sfri_0914 - major facilitator transporter 905 41.30 0 1077885..1078223 - 112 114562093 - Sfri_0915 - SecC motif-containing protein 906 45.17 0 1078439..1081345 - 968 114562094 valS Sfri_0916 - valyl-tRNA synthetase 907 41.78 0 1081379..1081828 - 149 114562095 - Sfri_0917 - DNA polymerase III chi subunit, HolC 908 40.05 0 1081914..1082285 - 123 114562096 - Sfri_0918 - hypothetical protein 909 45.02 0 1082298..1083221 - 307 114562097 - Sfri_0919 - transcriptional regulator, LysR family protein 910 43.65 0 1083338..1084093 + 251 114562098 - Sfri_0920 - short-chain dehydrogenase/reductase SDR 911 40.49 0 1084130..1084912 - 260 114562099 - Sfri_0921 - extracellular solute-binding protein 912 40.11 0 1085101..1086384 - 427 114562100 - Sfri_0922 - inner membrane transport protein YdhC 913 43.52 0 1086588..1087490 + 300 114562101 - Sfri_0923 - putative DNA-binding transcriptional regulator 914 45.46 +1 1087601..1089109 - 502 114562102 - Sfri_0924 - leucyl aminopeptidase 915 42.41 0 1089382..1090494 + 370 114562103 - Sfri_0925 - permease YjgP/YjgQ family protein 916 42.21 0 1090491..1091549 + 352 114562104 - Sfri_0926 - permease YjgP/YjgQ family protein 917 42.75 0 1091677..1092186 - 169 114562105 - Sfri_0927 - RDD domain-containing protein 918 36.86 -1 1092214..1092468 - 84 114562106 - Sfri_0928 - hypothetical protein 919 38.75 -1 1092484..1092834 - 116 114562107 - Sfri_0929 - hypothetical protein 920 45.45 +1 1092845..1093339 - 164 114562108 - Sfri_0930 - GCN5-related N-acetyltransferase 921 42.35 0 1093456..1094043 + 195 114562109 - Sfri_0931 - hypothetical protein 922 38.84 -1 1094062..1094805 - 247 114562110 - Sfri_0932 - hypothetical protein 923 39.38 0 1094857..1095501 - 214 114562111 - Sfri_0933 - hypothetical protein 924 38.51 -1 1095658..1096236 - 192 114562112 - Sfri_0934 - hypothetical protein 925 44.44 0 1096427..1096741 + 104 114562113 - Sfri_0935 - hypothetical protein 926 40.90 0 1096751..1097371 - 206 114562114 - Sfri_0936 - transcriptional regulator, TetR family protein 927 43.39 0 1097501..1098922 - 473 114562115 - Sfri_0937 - aldehyde dehydrogenase 928 40.97 0 1099180..1099611 + 143 114562116 - Sfri_0938 - UspA domain-containing protein 929 41.89 0 1099651..1100211 - 186 114562117 - Sfri_0939 - hypothetical protein 930 40.34 0 1100216..1101841 - 541 114562118 - Sfri_0940 - membrane-flanked domain-containing protein 931 42.52 0 1101888..1102616 - 242 114562119 - Sfri_0941 - membrane-flanked domain-containing protein 932 39.76 0 1102870..1103196 + 108 114562120 - Sfri_0942 - hypothetical protein 933 39.73 0 1103238..1104206 + 322 114562121 - Sfri_0943 - Mg2 transporter protein, CorA family protein 934 45.00 0 1104237..1104896 + 219 114562122 - Sfri_0944 - 2OG-Fe(II) oxygenase 935 43.00 0 1105169..1105468 + 99 114562123 - Sfri_0945 - BolA family protein 936 44.27 0 1105633..1106757 + 374 114562124 - Sfri_0946 - TRAP dicarboxylate transporter- DctP subunit 937 40.20 0 1106845..1107354 + 169 114562125 - Sfri_0947 - S-ribosylhomocysteinase 938 42.82 0 1107557..1109632 + 691 114562126 - Sfri_0948 - TonB-dependent receptor domain-containing protein 939 45.17 0 1110090..1111424 + 444 114562127 - Sfri_0949 - Na(+)-translocating NADH-quinone reductase subunit A 940 44.67 0 1111424..1112623 + 399 114562128 - Sfri_0950 - Na(+)-translocating NADH-quinone reductase subunit B 941 41.48 0 1112616..1113401 + 261 114562129 - Sfri_0951 - Na(+)-translocating NADH-quinone reductase subunit C 942 41.23 0 1113401..1114033 + 210 114562130 - Sfri_0952 - Na(+)-translocating NADH-quinone reductase subunit D 943 41.71 0 1114039..1114647 + 202 114562131 - Sfri_0953 - Na(+)-translocating NADH-quinone reductase subunit E 944 42.15 0 1114694..1115941 + 415 114562132 - Sfri_0954 - Na(+)-translocating NADH-quinone reductase subunit F 945 40.93 0 1116063..1117076 + 337 114562133 - Sfri_0955 - ApbE family lipoprotein 946 37.33 -1 1117162..1117386 + 74 114562134 - Sfri_0956 - hypothetical protein 947 38.22 -1 1117620..1118090 + 156 114562135 - Sfri_0957 - bacterioferritin 948 38.46 -1 1118103..1118570 + 155 114562136 - Sfri_0958 - bacterioferritin 949 31.65 -2 1118895..1119368 + 157 114562137 - Sfri_0959 - hypothetical protein 950 30.83 -2 1119370..1119888 + 172 114562138 - Sfri_0960 - ankyrin 951 43.80 0 1120087..1121166 + 359 114562139 - Sfri_0961 - DNA polymerase IV 952 42.90 0 1121276..1122739 - 487 114562140 - Sfri_0962 - aminoacyl-histidine dipeptidase 953 45.81 +1 1122922..1124460 + 512 114562141 - Sfri_0963 - peptidase M17, leucyl aminopeptidase domain-containing protein 954 40.00 0 1124724..1124903 + 59 114562142 - Sfri_0964 - hypothetical protein 955 41.94 0 1125346..1126635 + 429 114562143 - Sfri_0965 - xanthine/uracil/vitamin C permease 956 44.68 0 1126919..1128028 + 369 114562144 - Sfri_0966 - gamma-glutamyl kinase 957 44.08 0 1128039..1129313 + 424 114562145 proA Sfri_0967 - gamma-glutamyl phosphate reductase 958 36.90 -1 1129396..1129731 - 111 114562146 - Sfri_0968 - hypothetical protein 959 41.63 0 1130511..1132427 + 638 114562147 - Sfri_0969 - chaperone protein DnaK 960 45.45 +1 1132539..1133669 + 376 114562148 - Sfri_0970 - chaperone protein DnaJ 961 45.01 0 1133772..1135004 + 410 114562149 - Sfri_0971 - DEAD/DEAH box helicase domain-containing protein 962 46.59 +1 1135127..1135933 + 268 114562150 - Sfri_0972 - peptidase M48, Ste24p 963 45.95 +1 1136013..1136630 + 205 114562151 - Sfri_0973 - peptidylprolyl isomerase, FKBP-type 964 44.77 0 1136714..1137526 + 270 114562152 - Sfri_0974 - dihydrodipicolinate reductase 965 43.89 0 1137713..1138858 + 381 114562153 - Sfri_0975 - carbamoyl phosphate synthase small subunit 966 43.61 0 1138882..1142103 + 1073 114562154 carB Sfri_0976 - carbamoyl phosphate synthase large subunit 967 39.83 0 1142334..1142810 + 158 114562155 - Sfri_0977 - transcription elongation factor GreA 968 39.78 0 1143257..1143892 + 211 114562156 - Sfri_0978 - hypothetical protein 969 42.72 0 1144029..1145840 + 603 114562157 secD Sfri_0979 - preprotein translocase subunit SecD 970 41.56 0 1145845..1146768 + 307 114562158 secF Sfri_0980 - preprotein translocase subunit SecF 971 41.00 0 1146836..1147135 - 99 114562159 - Sfri_0981 - hypothetical protein 972 44.60 0 1147226..1147855 + 209 114562160 rrmJ Sfri_0982 - 23S rRNA methyltransferase J 973 42.55 0 1147902..1149875 + 657 114562161 - Sfri_0983 - ATP-dependent metalloprotease FtsH 974 44.44 0 1149915..1150778 + 287 114562162 - Sfri_0984 - dihydropteroate synthase 975 43.72 0 1150833..1152170 + 445 114562163 - Sfri_0985 - phosphoglucosamine mutase 976 44.57 0 1152310..1153092 + 260 114562164 - Sfri_0986 - Triose-phosphate isomerase 977 43.45 0 1153097..1153432 + 111 114562165 secG Sfri_0987 - preprotein translocase subunit SecG 978 38.96 -1 1153817..1154314 + 165 114562166 - Sfri_0988 - hypothetical protein 979 43.80 0 1154346..1155845 + 499 114562167 nusA Sfri_0989 - transcription elongation factor NusA 980 43.80 0 1155871..1158516 + 881 114562168 infB Sfri_0990 - translation initiation factor IF-2 981 40.97 0 1158583..1159014 + 143 114562169 rbfA Sfri_0991 - ribosome-binding factor A 982 42.87 0 1159014..1159967 + 317 114562170 - Sfri_0992 - tRNA pseudouridine synthase B 983 41.11 0 1160109..1160378 + 89 114562171 rpsO Sfri_0993 - 30S ribosomal protein S15 984 38.88 -1 1161509..1163545 - 678 114562172 - Sfri_0994 - diguanylate cyclase/phosphodiesterase 985 42.30 0 1163942..1166038 + 698 114562173 - Sfri_0995 - polynucleotide phosphorylase/polyadenylase 986 39.69 0 1166185..1167096 + 303 114562174 - Sfri_0996 - lipoprotein NlpI 987 41.94 0 1167173..1168753 + 526 114562175 prfC Sfri_0997 - peptide chain release factor 3 988 35.82 -2 1168835..1169035 + 66 114562176 - Sfri_0998 - hypothetical protein 989 37.93 -1 1169028..1169789 + 253 114562177 - Sfri_0999 - TatD-related deoxyribonuclease 990 40.38 0 1169967..1171229 + 420 114562178 - Sfri_1000 - nucleoside transporter 991 40.83 0 1171592..1172431 + 279 114562179 - Sfri_1001 - nucleoside-specific channel-forming protein, Tsx 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.