IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
866	 44.03	0	1031291..1032346	+	351	114562054	cobT	Sfri_0876	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
867	 45.29	+1	1032356..1033141	+	261	114562055	cobS	Sfri_0877	-	cobalamin synthase
868	 45.76	+1	1033141..1033671	+	176	114562056	-	Sfri_0878	-	cobalbumin biosynthesis enzyme
869	 45.55	+1	1033671..1035242	+	523	114562057	-	Sfri_0879	-	cobyric acid synthase
870	 43.02	0	1035239..1035868	+	209	114562058	-	Sfri_0880	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
871	 36.91	-1	1035945..1036754	-	269	114562059	-	Sfri_0881	-	extracellular solute-binding protein
872	 42.02	0	1036904..1037260	-	118	114562060	-	Sfri_0882	-	transcriptional regulator, HxlR family protein
873	 47.65	+1	1037382..1038743	+	453	114562061	-	Sfri_0883	-	aldehyde dehydrogenase
874	 46.67	+1	1038754..1039533	+	259	114562062	-	Sfri_0884	-	prolyl 4-hydroxylase, alpha subunit
875	 41.71	0	1040133..1040717	+	194	114562063	-	Sfri_0885	-	hypothetical protein
876	 42.87	0	1040904..1042643	-	579	114562064	-	Sfri_0886	-	pseudouridine synthase
877	 41.98	0	1042814..1043599	-	261	114562065	-	Sfri_0887	-	Beta-lactamase
878	 44.79	0	1043864..1044247	-	127	114562066	-	Sfri_0888	-	glyoxalase/bleomycin resistance protein/dioxygenase
879	 44.07	0	1044314..1045636	-	440	114562067	-	Sfri_0889	-	hypothetical protein
880	 39.94	0	1045817..1047391	+	524	114562068	-	Sfri_0890	-	sulfotransferase
881	 43.20	0	1047519..1048694	-	391	114562069	-	Sfri_0891	-	SecC motif-containing protein
882	 43.15	0	1048794..1049822	-	342	114562070	-	Sfri_0892	-	SecC motif-containing protein
883	 40.88	0	1049881..1050423	-	180	114562071	-	Sfri_0893	-	isochorismatase hydrolase
884	 44.89	0	1050555..1051592	+	345	114562072	-	Sfri_0894	-	hypothetical protein
885	 43.25	0	1051732..1052598	+	288	114562073	-	Sfri_0895	-	periplasmic binding protein
886	 34.99	-2	1053434..1054522	+	362	114562074	-	Sfri_0896	-	hypothetical protein
887	 46.03	+1	1055324..1056583	+	419	114562075	-	Sfri_0897	-	RND family efflux transporter MFP subunit
888	 45.78	+1	1057023..1057721	+	232	114562076	-	Sfri_0898	-	ABC transporter related
889	 43.15	0	1057732..1059045	+	437	114562077	-	Sfri_0899	-	hypothetical protein
890	 44.17	0	1059076..1060284	+	402	114562078	-	Sfri_0900	-	hypothetical protein
891	 43.69	0	1060404..1061852	+	482	114562079	-	Sfri_0901	-	two component, sigma54 specific, transcriptional regulator, Fis family protein
892	 43.73	0	1061855..1063210	+	451	114562080	-	Sfri_0902	-	periplasmic sensor signal transduction histidine kinase
893	 44.32	0	1063461..1064270	-	269	114562081	-	Sfri_0903	-	hypothetical protein
894	 43.88	0	1064273..1065211	-	312	114562082	-	Sfri_0904	-	hypothetical protein
895	 44.88	0	1065336..1065794	-	152	114562083	-	Sfri_0905	-	putative lipoprotein
896	 43.49	0	1066181..1066564	+	127	114562084	-	Sfri_0906	-	hypothetical protein
897	 43.90	0	1066679..1066924	-	81	114562085	-	Sfri_0907	-	hypothetical protein
898	 43.80	0	1067012..1067632	+	206	114562086	-	Sfri_0908	-	uracil-DNA glycosylase superfamily protein
899	 36.53	-1	1067675..1068175	-	166	114562087	-	Sfri_0909	-	hypothetical protein
900	 40.85	0	1068323..1070971	-	882	114562088	-	Sfri_0910	-	UTP-GlnB uridylyltransferase, GlnD
901	 40.76	0	1071053..1071766	+	237	114562089	-	Sfri_0911	-	pseudouridine synthase, Rsu
902	 39.39	0	1071831..1072787	+	318	114562090	-	Sfri_0912	-	transcriptional regulator, LysR family protein
903	 43.71	0	1073125..1075437	+	770	114562091	-	Sfri_0913	-	decaheme cytochrome c
904	 43.62	0	1076067..1077602	-	511	114562092	-	Sfri_0914	-	major facilitator transporter
905	 41.30	0	1077885..1078223	-	112	114562093	-	Sfri_0915	-	SecC motif-containing protein
906	 45.17	0	1078439..1081345	-	968	114562094	valS	Sfri_0916	-	valyl-tRNA synthetase
907	 41.78	0	1081379..1081828	-	149	114562095	-	Sfri_0917	-	DNA polymerase III chi subunit, HolC
908	 40.05	0	1081914..1082285	-	123	114562096	-	Sfri_0918	-	hypothetical protein
909	 45.02	0	1082298..1083221	-	307	114562097	-	Sfri_0919	-	transcriptional regulator, LysR family protein
910	 43.65	0	1083338..1084093	+	251	114562098	-	Sfri_0920	-	short-chain dehydrogenase/reductase SDR
911	 40.49	0	1084130..1084912	-	260	114562099	-	Sfri_0921	-	extracellular solute-binding protein
912	 40.11	0	1085101..1086384	-	427	114562100	-	Sfri_0922	-	inner membrane transport protein YdhC
913	 43.52	0	1086588..1087490	+	300	114562101	-	Sfri_0923	-	putative DNA-binding transcriptional regulator
914	 45.46	+1	1087601..1089109	-	502	114562102	-	Sfri_0924	-	leucyl aminopeptidase
915	 42.41	0	1089382..1090494	+	370	114562103	-	Sfri_0925	-	permease YjgP/YjgQ family protein
916	 42.21	0	1090491..1091549	+	352	114562104	-	Sfri_0926	-	permease YjgP/YjgQ family protein
917	 42.75	0	1091677..1092186	-	169	114562105	-	Sfri_0927	-	RDD domain-containing protein
918	 36.86	-1	1092214..1092468	-	84	114562106	-	Sfri_0928	-	hypothetical protein
919	 38.75	-1	1092484..1092834	-	116	114562107	-	Sfri_0929	-	hypothetical protein
920	 45.45	+1	1092845..1093339	-	164	114562108	-	Sfri_0930	-	GCN5-related N-acetyltransferase
921	 42.35	0	1093456..1094043	+	195	114562109	-	Sfri_0931	-	hypothetical protein
922	 38.84	-1	1094062..1094805	-	247	114562110	-	Sfri_0932	-	hypothetical protein
923	 39.38	0	1094857..1095501	-	214	114562111	-	Sfri_0933	-	hypothetical protein
924	 38.51	-1	1095658..1096236	-	192	114562112	-	Sfri_0934	-	hypothetical protein
925	 44.44	0	1096427..1096741	+	104	114562113	-	Sfri_0935	-	hypothetical protein
926	 40.90	0	1096751..1097371	-	206	114562114	-	Sfri_0936	-	transcriptional regulator, TetR family protein
927	 43.39	0	1097501..1098922	-	473	114562115	-	Sfri_0937	-	aldehyde dehydrogenase
928	 40.97	0	1099180..1099611	+	143	114562116	-	Sfri_0938	-	UspA domain-containing protein
929	 41.89	0	1099651..1100211	-	186	114562117	-	Sfri_0939	-	hypothetical protein
930	 40.34	0	1100216..1101841	-	541	114562118	-	Sfri_0940	-	membrane-flanked domain-containing protein
931	 42.52	0	1101888..1102616	-	242	114562119	-	Sfri_0941	-	membrane-flanked domain-containing protein
932	 39.76	0	1102870..1103196	+	108	114562120	-	Sfri_0942	-	hypothetical protein
933	 39.73	0	1103238..1104206	+	322	114562121	-	Sfri_0943	-	Mg2 transporter protein, CorA family protein
934	 45.00	0	1104237..1104896	+	219	114562122	-	Sfri_0944	-	2OG-Fe(II) oxygenase
935	 43.00	0	1105169..1105468	+	99	114562123	-	Sfri_0945	-	BolA family protein
936	 44.27	0	1105633..1106757	+	374	114562124	-	Sfri_0946	-	TRAP dicarboxylate transporter- DctP subunit
937	 40.20	0	1106845..1107354	+	169	114562125	-	Sfri_0947	-	S-ribosylhomocysteinase
938	 42.82	0	1107557..1109632	+	691	114562126	-	Sfri_0948	-	TonB-dependent receptor domain-containing protein
939	 45.17	0	1110090..1111424	+	444	114562127	-	Sfri_0949	-	Na(+)-translocating NADH-quinone reductase subunit A
940	 44.67	0	1111424..1112623	+	399	114562128	-	Sfri_0950	-	Na(+)-translocating NADH-quinone reductase subunit B
941	 41.48	0	1112616..1113401	+	261	114562129	-	Sfri_0951	-	Na(+)-translocating NADH-quinone reductase subunit C
942	 41.23	0	1113401..1114033	+	210	114562130	-	Sfri_0952	-	Na(+)-translocating NADH-quinone reductase subunit D
943	 41.71	0	1114039..1114647	+	202	114562131	-	Sfri_0953	-	Na(+)-translocating NADH-quinone reductase subunit E
944	 42.15	0	1114694..1115941	+	415	114562132	-	Sfri_0954	-	Na(+)-translocating NADH-quinone reductase subunit F
945	 40.93	0	1116063..1117076	+	337	114562133	-	Sfri_0955	-	ApbE family lipoprotein
946	 37.33	-1	1117162..1117386	+	74	114562134	-	Sfri_0956	-	hypothetical protein
947	 38.22	-1	1117620..1118090	+	156	114562135	-	Sfri_0957	-	bacterioferritin
948	 38.46	-1	1118103..1118570	+	155	114562136	-	Sfri_0958	-	bacterioferritin
949	 31.65	-2	1118895..1119368	+	157	114562137	-	Sfri_0959	-	hypothetical protein
950	 30.83	-2	1119370..1119888	+	172	114562138	-	Sfri_0960	-	ankyrin
951	 43.80	0	1120087..1121166	+	359	114562139	-	Sfri_0961	-	DNA polymerase IV
952	 42.90	0	1121276..1122739	-	487	114562140	-	Sfri_0962	-	aminoacyl-histidine dipeptidase
953	 45.81	+1	1122922..1124460	+	512	114562141	-	Sfri_0963	-	peptidase M17, leucyl aminopeptidase domain-containing protein
954	 40.00	0	1124724..1124903	+	59	114562142	-	Sfri_0964	-	hypothetical protein
955	 41.94	0	1125346..1126635	+	429	114562143	-	Sfri_0965	-	xanthine/uracil/vitamin C permease
956	 44.68	0	1126919..1128028	+	369	114562144	-	Sfri_0966	-	gamma-glutamyl kinase
957	 44.08	0	1128039..1129313	+	424	114562145	proA	Sfri_0967	-	gamma-glutamyl phosphate reductase
958	 36.90	-1	1129396..1129731	-	111	114562146	-	Sfri_0968	-	hypothetical protein
959	 41.63	0	1130511..1132427	+	638	114562147	-	Sfri_0969	-	chaperone protein DnaK
960	 45.45	+1	1132539..1133669	+	376	114562148	-	Sfri_0970	-	chaperone protein DnaJ
961	 45.01	0	1133772..1135004	+	410	114562149	-	Sfri_0971	-	DEAD/DEAH box helicase domain-containing protein
962	 46.59	+1	1135127..1135933	+	268	114562150	-	Sfri_0972	-	peptidase M48, Ste24p
963	 45.95	+1	1136013..1136630	+	205	114562151	-	Sfri_0973	-	peptidylprolyl isomerase, FKBP-type
964	 44.77	0	1136714..1137526	+	270	114562152	-	Sfri_0974	-	dihydrodipicolinate reductase
965	 43.89	0	1137713..1138858	+	381	114562153	-	Sfri_0975	-	carbamoyl phosphate synthase small subunit
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.