version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 844 43.03 0 1002358..1003656 + 432 114562032 - Sfri_0854 - major facilitator transporter 845 40.46 0 1003892..1004242 + 116 114562033 - Sfri_0855 - hypothetical protein 846 43.72 0 1004418..1004966 + 182 114562034 - Sfri_0856 - methylation site containing protein 847 40.70 0 1005349..1005837 + 162 114562035 - Sfri_0857 - hypothetical protein 848 43.95 0 1005955..1007244 - 429 114562036 - Sfri_0858 - cytochrome c, class I 849 44.51 0 1007241..1007777 - 178 114562037 - Sfri_0859 - 2Fe-2S iron-sulfur cluster binding domain-containing protein 850 47.67 +1 1007774..1010647 - 957 114562038 - Sfri_0860 - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 851 39.47 0 1011558..1013186 + 542 114562039 - Sfri_0861 - methyl-accepting chemotaxis sensory transducer 852 47.32 +1 1013523..1014809 + 428 114562040 - Sfri_0862 - acetyl-CoA hydrolase/transferase 853 38.43 -1 1015589..1016314 + 241 114562041 - Sfri_0863 - hypothetical protein 854 40.13 0 1016762..1017805 - 347 114562042 - Sfri_0864 - transposase IS116/IS110/IS902 family protein 855 42.95 0 1018193..1018504 + 103 114562043 - Sfri_0865 - transposase IS3/IS911 family protein 856 42.31 0 1018558..1019370 + 270 114562044 - Sfri_0866 - integrase catalytic subunit 857 44.44 0 1019805..1020227 + 140 114562045 - Sfri_0867 - thioredoxin 858 41.61 0 1020322..1020768 + 148 114562046 - Sfri_0868 - hypothetical protein 859 33.54 -2 1021085..1021564 + 159 114562047 - Sfri_0869 - hypothetical protein 860 41.21 0 1022002..1023156 - 384 114562048 - Sfri_0870 - lipase, class 3 861 38.92 -1 1023185..1023757 - 190 114562049 - Sfri_0871 - hypothetical protein 862 47.24 +1 1024225..1027941 - 1238 114562050 metH Sfri_0872 - B12-dependent methionine synthase 863 47.31 +1 1028212..1028955 + 247 114562051 - Sfri_0873 - phosphoglycerate mutase 864 42.84 0 1029253..1030062 + 269 114562052 - Sfri_0874 - ABC transporter related 865 46.25 +1 1030055..1031161 + 368 114562053 - Sfri_0875 - transport system permease protein 866 44.03 0 1031291..1032346 + 351 114562054 cobT Sfri_0876 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 867 45.29 +1 1032356..1033141 + 261 114562055 cobS Sfri_0877 - cobalamin synthase 868 45.76 +1 1033141..1033671 + 176 114562056 - Sfri_0878 - cobalbumin biosynthesis enzyme 869 45.55 +1 1033671..1035242 + 523 114562057 - Sfri_0879 - cobyric acid synthase 870 43.02 0 1035239..1035868 + 209 114562058 - Sfri_0880 - cob(I)yrinic acid a,c-diamide adenosyltransferase 871 36.91 -1 1035945..1036754 - 269 114562059 - Sfri_0881 - extracellular solute-binding protein 872 42.02 0 1036904..1037260 - 118 114562060 - Sfri_0882 - transcriptional regulator, HxlR family protein 873 47.65 +1 1037382..1038743 + 453 114562061 - Sfri_0883 - aldehyde dehydrogenase 874 46.67 +1 1038754..1039533 + 259 114562062 - Sfri_0884 - prolyl 4-hydroxylase, alpha subunit 875 41.71 0 1040133..1040717 + 194 114562063 - Sfri_0885 - hypothetical protein 876 42.87 0 1040904..1042643 - 579 114562064 - Sfri_0886 - pseudouridine synthase 877 41.98 0 1042814..1043599 - 261 114562065 - Sfri_0887 - Beta-lactamase 878 44.79 0 1043864..1044247 - 127 114562066 - Sfri_0888 - glyoxalase/bleomycin resistance protein/dioxygenase 879 44.07 0 1044314..1045636 - 440 114562067 - Sfri_0889 - hypothetical protein 880 39.94 0 1045817..1047391 + 524 114562068 - Sfri_0890 - sulfotransferase 881 43.20 0 1047519..1048694 - 391 114562069 - Sfri_0891 - SecC motif-containing protein 882 43.15 0 1048794..1049822 - 342 114562070 - Sfri_0892 - SecC motif-containing protein 883 40.88 0 1049881..1050423 - 180 114562071 - Sfri_0893 - isochorismatase hydrolase 884 44.89 0 1050555..1051592 + 345 114562072 - Sfri_0894 - hypothetical protein 885 43.25 0 1051732..1052598 + 288 114562073 - Sfri_0895 - periplasmic binding protein 886 34.99 -2 1053434..1054522 + 362 114562074 - Sfri_0896 - hypothetical protein 887 46.03 +1 1055324..1056583 + 419 114562075 - Sfri_0897 - RND family efflux transporter MFP subunit 888 45.78 +1 1057023..1057721 + 232 114562076 - Sfri_0898 - ABC transporter related 889 43.15 0 1057732..1059045 + 437 114562077 - Sfri_0899 - hypothetical protein 890 44.17 0 1059076..1060284 + 402 114562078 - Sfri_0900 - hypothetical protein 891 43.69 0 1060404..1061852 + 482 114562079 - Sfri_0901 - two component, sigma54 specific, transcriptional regulator, Fis family protein 892 43.73 0 1061855..1063210 + 451 114562080 - Sfri_0902 - periplasmic sensor signal transduction histidine kinase 893 44.32 0 1063461..1064270 - 269 114562081 - Sfri_0903 - hypothetical protein 894 43.88 0 1064273..1065211 - 312 114562082 - Sfri_0904 - hypothetical protein 895 44.88 0 1065336..1065794 - 152 114562083 - Sfri_0905 - putative lipoprotein 896 43.49 0 1066181..1066564 + 127 114562084 - Sfri_0906 - hypothetical protein 897 43.90 0 1066679..1066924 - 81 114562085 - Sfri_0907 - hypothetical protein 898 43.80 0 1067012..1067632 + 206 114562086 - Sfri_0908 - uracil-DNA glycosylase superfamily protein 899 36.53 -1 1067675..1068175 - 166 114562087 - Sfri_0909 - hypothetical protein 900 40.85 0 1068323..1070971 - 882 114562088 - Sfri_0910 - UTP-GlnB uridylyltransferase, GlnD 901 40.76 0 1071053..1071766 + 237 114562089 - Sfri_0911 - pseudouridine synthase, Rsu 902 39.39 0 1071831..1072787 + 318 114562090 - Sfri_0912 - transcriptional regulator, LysR family protein 903 43.71 0 1073125..1075437 + 770 114562091 - Sfri_0913 - decaheme cytochrome c 904 43.62 0 1076067..1077602 - 511 114562092 - Sfri_0914 - major facilitator transporter 905 41.30 0 1077885..1078223 - 112 114562093 - Sfri_0915 - SecC motif-containing protein 906 45.17 0 1078439..1081345 - 968 114562094 valS Sfri_0916 - valyl-tRNA synthetase 907 41.78 0 1081379..1081828 - 149 114562095 - Sfri_0917 - DNA polymerase III chi subunit, HolC 908 40.05 0 1081914..1082285 - 123 114562096 - Sfri_0918 - hypothetical protein 909 45.02 0 1082298..1083221 - 307 114562097 - Sfri_0919 - transcriptional regulator, LysR family protein 910 43.65 0 1083338..1084093 + 251 114562098 - Sfri_0920 - short-chain dehydrogenase/reductase SDR 911 40.49 0 1084130..1084912 - 260 114562099 - Sfri_0921 - extracellular solute-binding protein 912 40.11 0 1085101..1086384 - 427 114562100 - Sfri_0922 - inner membrane transport protein YdhC 913 43.52 0 1086588..1087490 + 300 114562101 - Sfri_0923 - putative DNA-binding transcriptional regulator 914 45.46 +1 1087601..1089109 - 502 114562102 - Sfri_0924 - leucyl aminopeptidase 915 42.41 0 1089382..1090494 + 370 114562103 - Sfri_0925 - permease YjgP/YjgQ family protein 916 42.21 0 1090491..1091549 + 352 114562104 - Sfri_0926 - permease YjgP/YjgQ family protein 917 42.75 0 1091677..1092186 - 169 114562105 - Sfri_0927 - RDD domain-containing protein 918 36.86 -1 1092214..1092468 - 84 114562106 - Sfri_0928 - hypothetical protein 919 38.75 -1 1092484..1092834 - 116 114562107 - Sfri_0929 - hypothetical protein 920 45.45 +1 1092845..1093339 - 164 114562108 - Sfri_0930 - GCN5-related N-acetyltransferase 921 42.35 0 1093456..1094043 + 195 114562109 - Sfri_0931 - hypothetical protein 922 38.84 -1 1094062..1094805 - 247 114562110 - Sfri_0932 - hypothetical protein 923 39.38 0 1094857..1095501 - 214 114562111 - Sfri_0933 - hypothetical protein 924 38.51 -1 1095658..1096236 - 192 114562112 - Sfri_0934 - hypothetical protein 925 44.44 0 1096427..1096741 + 104 114562113 - Sfri_0935 - hypothetical protein 926 40.90 0 1096751..1097371 - 206 114562114 - Sfri_0936 - transcriptional regulator, TetR family protein 927 43.39 0 1097501..1098922 - 473 114562115 - Sfri_0937 - aldehyde dehydrogenase 928 40.97 0 1099180..1099611 + 143 114562116 - Sfri_0938 - UspA domain-containing protein 929 41.89 0 1099651..1100211 - 186 114562117 - Sfri_0939 - hypothetical protein 930 40.34 0 1100216..1101841 - 541 114562118 - Sfri_0940 - membrane-flanked domain-containing protein 931 42.52 0 1101888..1102616 - 242 114562119 - Sfri_0941 - membrane-flanked domain-containing protein 932 39.76 0 1102870..1103196 + 108 114562120 - Sfri_0942 - hypothetical protein 933 39.73 0 1103238..1104206 + 322 114562121 - Sfri_0943 - Mg2 transporter protein, CorA family protein 934 45.00 0 1104237..1104896 + 219 114562122 - Sfri_0944 - 2OG-Fe(II) oxygenase 935 43.00 0 1105169..1105468 + 99 114562123 - Sfri_0945 - BolA family protein 936 44.27 0 1105633..1106757 + 374 114562124 - Sfri_0946 - TRAP dicarboxylate transporter- DctP subunit 937 40.20 0 1106845..1107354 + 169 114562125 - Sfri_0947 - S-ribosylhomocysteinase 938 42.82 0 1107557..1109632 + 691 114562126 - Sfri_0948 - TonB-dependent receptor domain-containing protein 939 45.17 0 1110090..1111424 + 444 114562127 - Sfri_0949 - Na(+)-translocating NADH-quinone reductase subunit A 940 44.67 0 1111424..1112623 + 399 114562128 - Sfri_0950 - Na(+)-translocating NADH-quinone reductase subunit B 941 41.48 0 1112616..1113401 + 261 114562129 - Sfri_0951 - Na(+)-translocating NADH-quinone reductase subunit C 942 41.23 0 1113401..1114033 + 210 114562130 - Sfri_0952 - Na(+)-translocating NADH-quinone reductase subunit D 943 41.71 0 1114039..1114647 + 202 114562131 - Sfri_0953 - Na(+)-translocating NADH-quinone reductase subunit E 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0