IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
796	 44.80	0	947912..948940	+	342	114561984	-	Sfri_0804	-	alcohol dehydrogenase
797	 41.59	0	948984..949661	+	225	114561985	-	Sfri_0805	-	ThiJ/PfpI domain-containing protein
798	 39.94	0	949794..950414	+	206	114561986	-	Sfri_0806	-	glutathione S-transferase domain-containing protein
799	 39.83	0	950638..951237	+	199	114561987	-	Sfri_0807	-	hypothetical protein
800	 39.21	0	951227..952060	-	277	114561988	-	Sfri_0808	-	hypothetical protein
801	 41.99	0	952126..953349	-	407	114561989	-	Sfri_0809	-	major facilitator transporter
802	 44.30	0	953546..954949	+	467	114561990	-	Sfri_0810	-	hypothetical protein
803	 45.53	+1	954993..956156	+	387	114561991	-	Sfri_0811	-	putative lipoprotein
804	 45.55	+1	956299..957927	+	542	114561992	-	Sfri_0812	-	hypothetical protein
805	 42.15	0	958120..958641	+	173	114561993	-	Sfri_0813	-	protoporphyrinogen oxidase
806	 42.64	0	958645..959160	+	171	114561994	-	Sfri_0814	-	hypothetical protein
807	 42.44	0	959231..960130	-	299	114561995	-	Sfri_0815	-	transcriptional regulator, LysR family protein
808	 44.55	0	960263..961234	+	323	114561996	-	Sfri_0816	-	aldo/keto reductase
809	 42.50	0	961308..963107	+	599	114561997	-	Sfri_0817	-	alpha amylase, catalytic region
810	 39.88	0	963168..963824	-	218	114561998	-	Sfri_0818	-	DSBA oxidoreductase
811	 41.36	0	964284..964943	-	219	114561999	-	Sfri_0819	-	heat shock protein DnaJ domain-containing protein
812	 37.92	-1	965302..965868	+	188	114562000	-	Sfri_0820	-	hypoxanthine-guanine phosphoribosyltransferase
813	 40.26	0	966001..967935	+	644	114562001	-	Sfri_0821	-	peptidase U32
814	 40.43	0	968130..968453	+	107	114562002	-	Sfri_0822	-	hypothetical protein
815	 43.84	0	968579..969244	+	221	114562003	-	Sfri_0823	-	hypothetical protein
816	 42.83	0	969911..971890	+	659	114562004	-	Sfri_0824	-	TonB-dependent receptor, plug
817	 39.22	0	972004..972750	+	248	114562005	-	Sfri_0825	-	putative signal transduction protein
818	 42.75	0	972733..973635	-	300	114562006	-	Sfri_0826	-	transcriptional regulator, LysR family protein
819	 36.96	-1	974405..974680	+	91	114562007	-	Sfri_0829	-	hypothetical protein
820	 43.51	0	974702..975988	-	428	114562008	-	Sfri_0830	-	putative iron-sulfur cluster binding protein
821	 37.42	-1	975972..977855	-	627	114562009	-	Sfri_0831	-	diguanylate cyclase
822	 41.61	0	978274..978708	+	144	114562010	-	Sfri_0832	-	hypothetical protein
823	 43.34	0	978865..980553	-	562	114562011	-	Sfri_0833	-	malate dehydrogenase
824	 36.56	-1	980840..981304	-	154	114562012	-	Sfri_0834	-	hypothetical protein
825	 44.31	0	981506..982771	-	421	114562013	-	Sfri_0835	-	putative manganese transporter
826	 41.67	0	982784..983323	-	179	114562014	-	Sfri_0836	-	membrane-flanked domain-containing protein
827	 43.69	0	983548..986115	+	855	114562015	-	Sfri_0837	-	TonB-dependent receptor
828	 44.01	0	986163..986846	+	227	114562016	-	Sfri_0838	-	glutathione S-transferase domain-containing protein
829	 41.52	0	986909..987421	-	170	114562017	-	Sfri_0839	-	hypothetical protein
830	 39.30	0	987501..987902	-	133	114562018	-	Sfri_0840	-	hypothetical protein
831	 41.15	0	988018..988797	-	259	114562019	-	Sfri_0841	-	hypothetical protein
832	 42.10	0	989013..991100	-	695	114562020	-	Sfri_0842	-	endothelin-converting protein 1
833	 42.46	0	991393..992082	+	229	114562021	-	Sfri_0843	-	pseudouridine synthase, Rsu
834	 40.89	0	992287..993225	-	312	114562022	-	Sfri_0844	-	hypothetical protein
835	 45.16	0	993222..993830	-	202	114562023	-	Sfri_0845	-	hypothetical protein
836	 45.98	+1	993827..994324	-	165	114562024	-	Sfri_0846	-	ECF subfamily RNA polymerase sigma-24 factor
837	 41.01	0	994624..996486	+	620	114562025	-	Sfri_0847	-	methyl-accepting chemotaxis sensory transducer
838	 42.42	0	996639..997298	-	219	114562026	-	Sfri_0848	-	ribose-5-phosphate isomerase A
839	 40.47	0	997363..998175	-	270	114562027	-	Sfri_0849	-	MscS mechanosensitive ion channel
840	 40.87	0	998187..999539	-	450	114562028	-	Sfri_0850	-	hypothetical protein
841	 41.14	0	999830..1000738	+	302	114562029	pbpG	Sfri_0851	-	D-alanyl-D-alanine endopeptidase
842	 47.60	+1	1000910..1001554	+	214	114562030	-	Sfri_0852	-	anti-ECFsigma factor, ChrR
843	 39.97	0	1001641..1002258	+	205	114562031	-	Sfri_0853	-	negative transcriptional regulator
844	 43.03	0	1002358..1003656	+	432	114562032	-	Sfri_0854	-	major facilitator transporter
845	 40.46	0	1003892..1004242	+	116	114562033	-	Sfri_0855	-	hypothetical protein
846	 43.72	0	1004418..1004966	+	182	114562034	-	Sfri_0856	-	methylation site containing protein
847	 40.70	0	1005349..1005837	+	162	114562035	-	Sfri_0857	-	hypothetical protein
848	 43.95	0	1005955..1007244	-	429	114562036	-	Sfri_0858	-	cytochrome c, class I
849	 44.51	0	1007241..1007777	-	178	114562037	-	Sfri_0859	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
850	 47.67	+1	1007774..1010647	-	957	114562038	-	Sfri_0860	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
851	 39.47	0	1011558..1013186	+	542	114562039	-	Sfri_0861	-	methyl-accepting chemotaxis sensory transducer
852	 47.32	+1	1013523..1014809	+	428	114562040	-	Sfri_0862	-	acetyl-CoA hydrolase/transferase
853	 38.43	-1	1015589..1016314	+	241	114562041	-	Sfri_0863	-	hypothetical protein
854	 40.13	0	1016762..1017805	-	347	114562042	-	Sfri_0864	-	transposase IS116/IS110/IS902 family protein
855	 42.95	0	1018193..1018504	+	103	114562043	-	Sfri_0865	-	transposase IS3/IS911 family protein
856	 42.31	0	1018558..1019370	+	270	114562044	-	Sfri_0866	-	integrase catalytic subunit
857	 44.44	0	1019805..1020227	+	140	114562045	-	Sfri_0867	-	thioredoxin
858	 41.61	0	1020322..1020768	+	148	114562046	-	Sfri_0868	-	hypothetical protein
859	 33.54	-2	1021085..1021564	+	159	114562047	-	Sfri_0869	-	hypothetical protein
860	 41.21	0	1022002..1023156	-	384	114562048	-	Sfri_0870	-	lipase, class 3
861	 38.92	-1	1023185..1023757	-	190	114562049	-	Sfri_0871	-	hypothetical protein
862	 47.24	+1	1024225..1027941	-	1238	114562050	metH	Sfri_0872	-	B12-dependent methionine synthase
863	 47.31	+1	1028212..1028955	+	247	114562051	-	Sfri_0873	-	phosphoglycerate mutase
864	 42.84	0	1029253..1030062	+	269	114562052	-	Sfri_0874	-	ABC transporter related
865	 46.25	+1	1030055..1031161	+	368	114562053	-	Sfri_0875	-	transport system permease protein
866	 44.03	0	1031291..1032346	+	351	114562054	cobT	Sfri_0876	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
867	 45.29	+1	1032356..1033141	+	261	114562055	cobS	Sfri_0877	-	cobalamin synthase
868	 45.76	+1	1033141..1033671	+	176	114562056	-	Sfri_0878	-	cobalbumin biosynthesis enzyme
869	 45.55	+1	1033671..1035242	+	523	114562057	-	Sfri_0879	-	cobyric acid synthase
870	 43.02	0	1035239..1035868	+	209	114562058	-	Sfri_0880	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
871	 36.91	-1	1035945..1036754	-	269	114562059	-	Sfri_0881	-	extracellular solute-binding protein
872	 42.02	0	1036904..1037260	-	118	114562060	-	Sfri_0882	-	transcriptional regulator, HxlR family protein
873	 47.65	+1	1037382..1038743	+	453	114562061	-	Sfri_0883	-	aldehyde dehydrogenase
874	 46.67	+1	1038754..1039533	+	259	114562062	-	Sfri_0884	-	prolyl 4-hydroxylase, alpha subunit
875	 41.71	0	1040133..1040717	+	194	114562063	-	Sfri_0885	-	hypothetical protein
876	 42.87	0	1040904..1042643	-	579	114562064	-	Sfri_0886	-	pseudouridine synthase
877	 41.98	0	1042814..1043599	-	261	114562065	-	Sfri_0887	-	Beta-lactamase
878	 44.79	0	1043864..1044247	-	127	114562066	-	Sfri_0888	-	glyoxalase/bleomycin resistance protein/dioxygenase
879	 44.07	0	1044314..1045636	-	440	114562067	-	Sfri_0889	-	hypothetical protein
880	 39.94	0	1045817..1047391	+	524	114562068	-	Sfri_0890	-	sulfotransferase
881	 43.20	0	1047519..1048694	-	391	114562069	-	Sfri_0891	-	SecC motif-containing protein
882	 43.15	0	1048794..1049822	-	342	114562070	-	Sfri_0892	-	SecC motif-containing protein
883	 40.88	0	1049881..1050423	-	180	114562071	-	Sfri_0893	-	isochorismatase hydrolase
884	 44.89	0	1050555..1051592	+	345	114562072	-	Sfri_0894	-	hypothetical protein
885	 43.25	0	1051732..1052598	+	288	114562073	-	Sfri_0895	-	periplasmic binding protein
886	 34.99	-2	1053434..1054522	+	362	114562074	-	Sfri_0896	-	hypothetical protein
887	 46.03	+1	1055324..1056583	+	419	114562075	-	Sfri_0897	-	RND family efflux transporter MFP subunit
888	 45.78	+1	1057023..1057721	+	232	114562076	-	Sfri_0898	-	ABC transporter related
889	 43.15	0	1057732..1059045	+	437	114562077	-	Sfri_0899	-	hypothetical protein
890	 44.17	0	1059076..1060284	+	402	114562078	-	Sfri_0900	-	hypothetical protein
891	 43.69	0	1060404..1061852	+	482	114562079	-	Sfri_0901	-	two component, sigma54 specific, transcriptional regulator, Fis family protein
892	 43.73	0	1061855..1063210	+	451	114562080	-	Sfri_0902	-	periplasmic sensor signal transduction histidine kinase
893	 44.32	0	1063461..1064270	-	269	114562081	-	Sfri_0903	-	hypothetical protein
894	 43.88	0	1064273..1065211	-	312	114562082	-	Sfri_0904	-	hypothetical protein
895	 44.88	0	1065336..1065794	-	152	114562083	-	Sfri_0905	-	putative lipoprotein
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.