version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 796 44.80 0 947912..948940 + 342 114561984 - Sfri_0804 - alcohol dehydrogenase 797 41.59 0 948984..949661 + 225 114561985 - Sfri_0805 - ThiJ/PfpI domain-containing protein 798 39.94 0 949794..950414 + 206 114561986 - Sfri_0806 - glutathione S-transferase domain-containing protein 799 39.83 0 950638..951237 + 199 114561987 - Sfri_0807 - hypothetical protein 800 39.21 0 951227..952060 - 277 114561988 - Sfri_0808 - hypothetical protein 801 41.99 0 952126..953349 - 407 114561989 - Sfri_0809 - major facilitator transporter 802 44.30 0 953546..954949 + 467 114561990 - Sfri_0810 - hypothetical protein 803 45.53 +1 954993..956156 + 387 114561991 - Sfri_0811 - putative lipoprotein 804 45.55 +1 956299..957927 + 542 114561992 - Sfri_0812 - hypothetical protein 805 42.15 0 958120..958641 + 173 114561993 - Sfri_0813 - protoporphyrinogen oxidase 806 42.64 0 958645..959160 + 171 114561994 - Sfri_0814 - hypothetical protein 807 42.44 0 959231..960130 - 299 114561995 - Sfri_0815 - transcriptional regulator, LysR family protein 808 44.55 0 960263..961234 + 323 114561996 - Sfri_0816 - aldo/keto reductase 809 42.50 0 961308..963107 + 599 114561997 - Sfri_0817 - alpha amylase, catalytic region 810 39.88 0 963168..963824 - 218 114561998 - Sfri_0818 - DSBA oxidoreductase 811 41.36 0 964284..964943 - 219 114561999 - Sfri_0819 - heat shock protein DnaJ domain-containing protein 812 37.92 -1 965302..965868 + 188 114562000 - Sfri_0820 - hypoxanthine-guanine phosphoribosyltransferase 813 40.26 0 966001..967935 + 644 114562001 - Sfri_0821 - peptidase U32 814 40.43 0 968130..968453 + 107 114562002 - Sfri_0822 - hypothetical protein 815 43.84 0 968579..969244 + 221 114562003 - Sfri_0823 - hypothetical protein 816 42.83 0 969911..971890 + 659 114562004 - Sfri_0824 - TonB-dependent receptor, plug 817 39.22 0 972004..972750 + 248 114562005 - Sfri_0825 - putative signal transduction protein 818 42.75 0 972733..973635 - 300 114562006 - Sfri_0826 - transcriptional regulator, LysR family protein 819 36.96 -1 974405..974680 + 91 114562007 - Sfri_0829 - hypothetical protein 820 43.51 0 974702..975988 - 428 114562008 - Sfri_0830 - putative iron-sulfur cluster binding protein 821 37.42 -1 975972..977855 - 627 114562009 - Sfri_0831 - diguanylate cyclase 822 41.61 0 978274..978708 + 144 114562010 - Sfri_0832 - hypothetical protein 823 43.34 0 978865..980553 - 562 114562011 - Sfri_0833 - malate dehydrogenase 824 36.56 -1 980840..981304 - 154 114562012 - Sfri_0834 - hypothetical protein 825 44.31 0 981506..982771 - 421 114562013 - Sfri_0835 - putative manganese transporter 826 41.67 0 982784..983323 - 179 114562014 - Sfri_0836 - membrane-flanked domain-containing protein 827 43.69 0 983548..986115 + 855 114562015 - Sfri_0837 - TonB-dependent receptor 828 44.01 0 986163..986846 + 227 114562016 - Sfri_0838 - glutathione S-transferase domain-containing protein 829 41.52 0 986909..987421 - 170 114562017 - Sfri_0839 - hypothetical protein 830 39.30 0 987501..987902 - 133 114562018 - Sfri_0840 - hypothetical protein 831 41.15 0 988018..988797 - 259 114562019 - Sfri_0841 - hypothetical protein 832 42.10 0 989013..991100 - 695 114562020 - Sfri_0842 - endothelin-converting protein 1 833 42.46 0 991393..992082 + 229 114562021 - Sfri_0843 - pseudouridine synthase, Rsu 834 40.89 0 992287..993225 - 312 114562022 - Sfri_0844 - hypothetical protein 835 45.16 0 993222..993830 - 202 114562023 - Sfri_0845 - hypothetical protein 836 45.98 +1 993827..994324 - 165 114562024 - Sfri_0846 - ECF subfamily RNA polymerase sigma-24 factor 837 41.01 0 994624..996486 + 620 114562025 - Sfri_0847 - methyl-accepting chemotaxis sensory transducer 838 42.42 0 996639..997298 - 219 114562026 - Sfri_0848 - ribose-5-phosphate isomerase A 839 40.47 0 997363..998175 - 270 114562027 - Sfri_0849 - MscS mechanosensitive ion channel 840 40.87 0 998187..999539 - 450 114562028 - Sfri_0850 - hypothetical protein 841 41.14 0 999830..1000738 + 302 114562029 pbpG Sfri_0851 - D-alanyl-D-alanine endopeptidase 842 47.60 +1 1000910..1001554 + 214 114562030 - Sfri_0852 - anti-ECFsigma factor, ChrR 843 39.97 0 1001641..1002258 + 205 114562031 - Sfri_0853 - negative transcriptional regulator 844 43.03 0 1002358..1003656 + 432 114562032 - Sfri_0854 - major facilitator transporter 845 40.46 0 1003892..1004242 + 116 114562033 - Sfri_0855 - hypothetical protein 846 43.72 0 1004418..1004966 + 182 114562034 - Sfri_0856 - methylation site containing protein 847 40.70 0 1005349..1005837 + 162 114562035 - Sfri_0857 - hypothetical protein 848 43.95 0 1005955..1007244 - 429 114562036 - Sfri_0858 - cytochrome c, class I 849 44.51 0 1007241..1007777 - 178 114562037 - Sfri_0859 - 2Fe-2S iron-sulfur cluster binding domain-containing protein 850 47.67 +1 1007774..1010647 - 957 114562038 - Sfri_0860 - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 851 39.47 0 1011558..1013186 + 542 114562039 - Sfri_0861 - methyl-accepting chemotaxis sensory transducer 852 47.32 +1 1013523..1014809 + 428 114562040 - Sfri_0862 - acetyl-CoA hydrolase/transferase 853 38.43 -1 1015589..1016314 + 241 114562041 - Sfri_0863 - hypothetical protein 854 40.13 0 1016762..1017805 - 347 114562042 - Sfri_0864 - transposase IS116/IS110/IS902 family protein 855 42.95 0 1018193..1018504 + 103 114562043 - Sfri_0865 - transposase IS3/IS911 family protein 856 42.31 0 1018558..1019370 + 270 114562044 - Sfri_0866 - integrase catalytic subunit 857 44.44 0 1019805..1020227 + 140 114562045 - Sfri_0867 - thioredoxin 858 41.61 0 1020322..1020768 + 148 114562046 - Sfri_0868 - hypothetical protein 859 33.54 -2 1021085..1021564 + 159 114562047 - Sfri_0869 - hypothetical protein 860 41.21 0 1022002..1023156 - 384 114562048 - Sfri_0870 - lipase, class 3 861 38.92 -1 1023185..1023757 - 190 114562049 - Sfri_0871 - hypothetical protein 862 47.24 +1 1024225..1027941 - 1238 114562050 metH Sfri_0872 - B12-dependent methionine synthase 863 47.31 +1 1028212..1028955 + 247 114562051 - Sfri_0873 - phosphoglycerate mutase 864 42.84 0 1029253..1030062 + 269 114562052 - Sfri_0874 - ABC transporter related 865 46.25 +1 1030055..1031161 + 368 114562053 - Sfri_0875 - transport system permease protein 866 44.03 0 1031291..1032346 + 351 114562054 cobT Sfri_0876 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 867 45.29 +1 1032356..1033141 + 261 114562055 cobS Sfri_0877 - cobalamin synthase 868 45.76 +1 1033141..1033671 + 176 114562056 - Sfri_0878 - cobalbumin biosynthesis enzyme 869 45.55 +1 1033671..1035242 + 523 114562057 - Sfri_0879 - cobyric acid synthase 870 43.02 0 1035239..1035868 + 209 114562058 - Sfri_0880 - cob(I)yrinic acid a,c-diamide adenosyltransferase 871 36.91 -1 1035945..1036754 - 269 114562059 - Sfri_0881 - extracellular solute-binding protein 872 42.02 0 1036904..1037260 - 118 114562060 - Sfri_0882 - transcriptional regulator, HxlR family protein 873 47.65 +1 1037382..1038743 + 453 114562061 - Sfri_0883 - aldehyde dehydrogenase 874 46.67 +1 1038754..1039533 + 259 114562062 - Sfri_0884 - prolyl 4-hydroxylase, alpha subunit 875 41.71 0 1040133..1040717 + 194 114562063 - Sfri_0885 - hypothetical protein 876 42.87 0 1040904..1042643 - 579 114562064 - Sfri_0886 - pseudouridine synthase 877 41.98 0 1042814..1043599 - 261 114562065 - Sfri_0887 - Beta-lactamase 878 44.79 0 1043864..1044247 - 127 114562066 - Sfri_0888 - glyoxalase/bleomycin resistance protein/dioxygenase 879 44.07 0 1044314..1045636 - 440 114562067 - Sfri_0889 - hypothetical protein 880 39.94 0 1045817..1047391 + 524 114562068 - Sfri_0890 - sulfotransferase 881 43.20 0 1047519..1048694 - 391 114562069 - Sfri_0891 - SecC motif-containing protein 882 43.15 0 1048794..1049822 - 342 114562070 - Sfri_0892 - SecC motif-containing protein 883 40.88 0 1049881..1050423 - 180 114562071 - Sfri_0893 - isochorismatase hydrolase 884 44.89 0 1050555..1051592 + 345 114562072 - Sfri_0894 - hypothetical protein 885 43.25 0 1051732..1052598 + 288 114562073 - Sfri_0895 - periplasmic binding protein 886 34.99 -2 1053434..1054522 + 362 114562074 - Sfri_0896 - hypothetical protein 887 46.03 +1 1055324..1056583 + 419 114562075 - Sfri_0897 - RND family efflux transporter MFP subunit 888 45.78 +1 1057023..1057721 + 232 114562076 - Sfri_0898 - ABC transporter related 889 43.15 0 1057732..1059045 + 437 114562077 - Sfri_0899 - hypothetical protein 890 44.17 0 1059076..1060284 + 402 114562078 - Sfri_0900 - hypothetical protein 891 43.69 0 1060404..1061852 + 482 114562079 - Sfri_0901 - two component, sigma54 specific, transcriptional regulator, Fis family protein 892 43.73 0 1061855..1063210 + 451 114562080 - Sfri_0902 - periplasmic sensor signal transduction histidine kinase 893 44.32 0 1063461..1064270 - 269 114562081 - Sfri_0903 - hypothetical protein 894 43.88 0 1064273..1065211 - 312 114562082 - Sfri_0904 - hypothetical protein 895 44.88 0 1065336..1065794 - 152 114562083 - Sfri_0905 - putative lipoprotein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0