IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.09   STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
34	 41.73	0	38321..39154	+	277	114561222	-	Sfri_0034	-	shikimate 5-dehydrogenase
35	 38.76	-1	39154..39411	+	85	114561223	-	Sfri_0035	-	hypothetical protein
36	 37.91	-1	39408..40631	-	407	114561224	-	Sfri_0036	-	diguanylate cyclase
37	 42.12	0	40917..41462	-	181	114561225	-	Sfri_0037	-	carbonic anhydrase
38	 38.77	-1	47851..50334	+	827	114561226	-	Sfri_0038	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
39	 39.38	0	50300..51274	-	324	114561227	-	Sfri_0039	-	alpha/beta hydrolase fold
40	 42.07	0	51337..53145	-	602	114561228	-	Sfri_0040	-	hypothetical protein
41	 42.84	0	53362..54360	+	332	114561229	-	Sfri_0041	-	adenosine deaminase
42	 38.40	-1	54434..55774	-	446	114561230	-	Sfri_0042	-	coproporphyrinogen III oxidase
43	 42.93	0	56007..56756	-	249	114561231	-	Sfri_0043	-	hypothetical protein
44	 44.69	0	56812..58440	-	542	114561232	-	Sfri_0044	-	hypothetical protein
45	 41.70	0	58656..59312	+	218	114561233	-	Sfri_0045	-	multiple antibiotic resistance (MarC)-related proteins
46	 38.68	-1	59520..59837	+	105	114561234	-	Sfri_0046	-	hypothetical protein
47	 44.05	0	59837..62674	+	945	114561235	-	Sfri_0047	-	peptidase M6, immune inhibitor A
48	 44.23	0	62765..63379	-	204	114561236	-	Sfri_0048	-	chorismate lyase
49	 38.31	-1	63506..63907	+	133	114561237	-	Sfri_0049	-	flagellar basal body-associated protein FliL-like protein
50	 43.03	0	63907..64989	+	360	114561238	-	Sfri_0050	-	putative SAM-dependent methyltransferase
51	 42.81	0	64986..65840	-	284	114561239	-	Sfri_0051	-	formate dehydrogenase, subunit FdhD
52	 48.72	+2	66187..66654	+	155	114561240	-	Sfri_0052	-	hypothetical protein
53	 47.34	+1	66651..67307	+	218	114561241	-	Sfri_0053	-	hypothetical protein
54	 43.93	0	67463..69142	+	559	114561242	-	Sfri_0054	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
55	 41.14	0	69153..69818	+	221	114561243	-	Sfri_0055	-	cytoplasmic chaperone TorD family protein
56	 48.99	+2	69869..70066	+	65	114561244	-	Sfri_0056	-	twin-arginine translocation pathway signal
57	 45.33	+1	70083..72932	+	949	114561245	-	Sfri_0057	-	twin-arginine translocation pathway signal
58	 46.40	+1	72958..73554	+	198	114561246	-	Sfri_0058	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
59	 43.66	0	73603..74619	+	338	114561247	-	Sfri_0059	-	formate dehydrogenase, gamma subunit
60	 39.49	0	74879..75268	+	129	114561248	-	Sfri_0060	-	rare lipoprotein A
61	 40.74	0	75399..76208	+	269	114561249	-	Sfri_0061	-	hypothetical protein
62	 40.10	0	76457..77254	+	265	114561250	-	Sfri_0062	-	hypothetical protein
63	 46.21	+1	77363..78286	+	307	114561251	-	Sfri_0063	-	hypothetical protein
64	 37.26	-1	78381..79373	+	330	114561252	-	Sfri_0064	-	alpha/beta hydrolase fold
65	 43.65	0	79500..80216	+	238	114561253	-	Sfri_0065	-	ZIP zinc transporter family protein
66	 38.76	-1	80276..80662	+	128	114561254	-	Sfri_0066	-	hypothetical protein
67	 40.09	0	80778..81221	+	147	114561255	-	Sfri_0067	-	acetyltransferase, GNAT family protein
68	 47.36	+1	81492..82361	+	289	114561256	-	Sfri_0068	-	hypothetical protein
69	 43.04	0	82458..83498	-	346	114561257	-	Sfri_0069	-	hypothetical protein
70	 38.94	-1	83717..84376	+	219	114561258	-	Sfri_0070	-	hypothetical protein
71	 37.54	-1	84393..86246	-	617	114561259	-	Sfri_0071	-	TPR repeat-containing protein
72	 39.34	0	86474..86806	+	110	114561260	-	Sfri_0072	-	small multidrug resistance protein
73	 45.37	+1	87004..88191	-	395	114561261	-	Sfri_0073	-	iron-containing alcohol dehydrogenase
74	 41.15	0	88420..89289	+	289	114561262	-	Sfri_0074	-	transcriptional regulator, AraC family protein
75	 41.21	0	89357..89686	+	109	114561263	-	Sfri_0075	-	hypothetical protein
76	 41.18	0	90025..91362	+	445	114561264	-	Sfri_0076	-	coproporphyrinogen III oxidase
77	 47.04	+1	91451..92296	+	281	114561265	-	Sfri_0077	-	ribokinase-like domain-containing protein
78	 43.87	0	92590..93282	+	230	114561266	-	Sfri_0078	-	MOSC domain-containing protein
79	 38.06	-1	93339..93698	+	119	114561267	-	Sfri_0079	-	hypothetical protein
80	 42.60	0	93795..95705	-	636	114561268	-	Sfri_0080	-	methyl-accepting chemotaxis sensory transducer
81	 42.91	0	95924..97573	-	549	114561269	-	Sfri_0081	-	electron-transferring-flavoprotein dehydrogenase
82	 41.52	0	97897..98910	+	337	114561270	moaA	Sfri_0082	-	molybdenum cofactor biosynthesis protein A
83	 45.91	+1	98997..99473	+	158	114561271	moaC	Sfri_0083	-	molybdenum cofactor biosynthesis protein C
84	 46.59	+1	99538..99786	+	82	114561272	-	Sfri_0084	-	molybdopterin converting factor, subunit 1
85	 43.31	0	99788..100258	+	156	114561273	-	Sfri_0085	-	molybdopterin biosynthesis MoaE
86	 44.60	0	100290..101141	+	283	114561274	-	Sfri_0086	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
87	 44.64	0	101141..101821	+	226	114561275	-	Sfri_0087	-	molybdate ABC transporter, inner membrane subunit
88	 44.83	0	101802..102923	+	373	114561276	-	Sfri_0088	-	ABC transporter related
89	 38.89	-1	103294..103815	+	173	114561277	-	Sfri_0089	-	hypothetical protein
90	 40.50	0	103823..104506	+	227	114561278	-	Sfri_0090	-	two component transcriptional regulator, winged helix family protein
91	 42.83	0	104574..105815	+	413	114561279	-	Sfri_0091	-	periplasmic sensor signal transduction histidine kinase
92	 41.30	0	105856..106533	+	225	114561280	-	Sfri_0092	-	pseudouridine synthase Rlu family protein
93	 38.72	-1	106610..107890	-	426	114561281	-	Sfri_0093	-	diguanylate cyclase
94	 33.33	-2	107995..108162	+	55	114561282	-	Sfri_0094	-	hypothetical protein
95	 43.00	0	108277..108483	+	68	114561283	-	Sfri_0095	-	hypothetical protein
96	 42.67	0	108516..109286	-	256	114561284	-	Sfri_0096	-	molybdopterin biosynthesis protein MoeB
97	 43.22	0	109294..110547	-	417	114561285	-	Sfri_0097	-	molybdenum cofactor synthesis domain-containing protein
98	 38.58	-1	110654..110977	+	107	114561286	-	Sfri_0098	-	excinuclease ABC subunit C
99	 41.28	0	111080..111973	+	297	114561287	-	Sfri_0099	-	hypothetical protein
100	 43.23	0	112015..113874	-	619	114561288	-	Sfri_0100	-	peptidase M14, carboxypeptidase A
101	 45.40	+1	114063..115604	-	513	114561289	-	Sfri_0101	-	phosphoenolpyruvate carboxykinase
102	 41.23	0	115874..116734	-	286	114561290	hslO	Sfri_0102	-	Hsp33-like chaperonin
103	 41.60	0	116760..117158	-	132	114561291	-	Sfri_0103	-	RNA-binding S4 domain-containing protein
104	 41.86	0	117423..118337	+	304	114561292	-	Sfri_0104	-	general secretion pathway protein C
105	 42.99	0	118362..120494	+	710	114561293	-	Sfri_0105	-	general secretion pathway protein D
106	 43.11	0	120502..122046	+	514	114561294	-	Sfri_0106	-	general secretory pathway protein E
107	 45.99	+1	122050..123282	+	410	114561295	-	Sfri_0107	-	general secretion pathway protein F
108	 40.00	0	123379..123813	+	144	114561296	-	Sfri_0108	-	general secretion pathway protein G
109	 41.54	0	123815..124387	+	190	114561297	-	Sfri_0109	-	general secretion pathway protein H
110	 43.38	0	124380..124817	+	145	114561298	-	Sfri_0110	-	general secretion pathway protein I
111	 43.32	0	124798..125508	+	236	114561299	-	Sfri_0111	-	general secretion pathway protein J
112	 42.76	0	125508..126494	+	328	114561300	-	Sfri_0112	-	general secretion pathway protein K
113	 42.79	0	126546..127751	+	401	114561301	-	Sfri_0113	-	general secretion pathway protein L
114	 43.82	0	127753..128229	+	158	114561302	-	Sfri_0114	-	general secretion pathway M protein
115	 40.68	0	128239..129000	+	253	114561303	-	Sfri_0115	-	type II secretion system protein N
116	 41.44	0	129169..129834	-	221	114561304	-	Sfri_0116	-	HAD family hydrolase
117	 41.50	0	129912..130499	+	195	114561305	nudE	Sfri_0117	-	ADP-ribose diphosphatase NudE
118	 42.35	0	130616..131425	+	269	114561306	-	Sfri_0118	-	3'(2'),5'-bisphosphate nucleotidase
119	 40.24	0	131666..132766	-	366	114561307	-	Sfri_0119	-	tRNA 2-selenouridine synthase
120	 44.79	0	132766..133821	-	351	114561308	-	Sfri_0120	-	selenide, water dikinase
121	 40.81	0	134018..134632	+	204	114561309	-	Sfri_0121	-	putative transcriptional regulator, TetR family protein
122	 41.84	0	134619..136475	+	618	114561310	-	Sfri_0122	-	phospholipid/glycerol acyltransferase
123	 40.54	0	136557..137666	-	369	114561311	-	Sfri_0123	-	stearoyl-CoA 9-desaturase
124	 45.31	+1	137823..138440	+	205	114561312	-	Sfri_0124	-	DNA-binding transcriptional repressor FabR
125	 39.34	0	138520..139617	-	365	114561313	-	Sfri_0125	-	tRNA (uracil-5-)-methyltransferase
126	 39.62	0	139747..140526	+	259	114561314	-	Sfri_0126	-	glutamate racemase
127	 42.12	0	140574..141017	-	147	114561315	-	Sfri_0127	-	RNP-1 like RNA-binding protein
128	 31.75	-2	147215..147340	+	41	114561316	-	Sfri_0128	-	hypothetical protein
129	 45.88	+1	147337..147870	-	177	114561317	-	Sfri_0129	-	ISSod10, transposase OrfB
130	 40.42	0	147884..148363	-	159	114561318	-	Sfri_0130	-	ISSod10, transposase OrfA
131	 38.74	-1	148584..149600	+	338	114561319	-	Sfri_0131	-	UDP-N-acetylenolpyruvoylglucosamine reductase
132	 39.46	0	149597..150559	+	320	114561320	-	Sfri_0132	-	biotin--protein ligase
133	 40.17	0	150596..151546	-	316	114561321	-	Sfri_0133	-	pantothenate kinase
42.09	MEAN

3.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.