version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 729 39.41 0 859821..860396 - 191 114561917 - Sfri_0734 - OmpA domain-containing protein 730 41.78 0 861223..861435 + 70 114561918 - Sfri_0735 - cold-shock DNA-binding domain-containing protein 731 35.06 -2 861745..861975 + 76 114561919 - Sfri_0736 - hypothetical protein 732 36.18 -1 862520..863536 + 338 114561920 - Sfri_0737 - hypothetical protein 733 40.51 0 864240..866426 + 728 114561921 - Sfri_0738 - hypothetical protein 734 41.06 0 866514..868001 - 495 114561922 - Sfri_0739 - spore coat assembly protein-like protein 735 40.95 0 868349..869752 + 467 114561923 - Sfri_0740 - hypothetical protein 736 42.97 0 869889..870137 + 82 114561924 - Sfri_0741 - hypothetical protein 737 45.14 0 870214..871416 - 400 114561925 - Sfri_0742 - Rh family protein/ammonium transporter 738 47.35 +1 871832..873001 + 389 114561926 - Sfri_0743 - lipid-transfer protein 739 41.07 0 874696..875238 + 180 114561927 - Sfri_0745 - hypothetical protein 740 44.44 0 875419..876066 + 215 114561928 - Sfri_0746 - DSBA oxidoreductase 741 44.59 0 876116..878461 - 781 114561929 - Sfri_0747 - oxidoreductase alpha (molybdopterin) subunit 742 43.38 0 878454..879269 - 271 114561930 - Sfri_0748 - formate dehydrogenase family accessory protein FdhD 743 41.89 0 879404..880303 + 299 114561931 - Sfri_0749 - transcriptional regulator, LysR family protein 744 40.35 0 880644..880928 + 94 114561932 - Sfri_0750 - heat shock protein DnaJ domain-containing protein 745 41.86 0 880936..881463 + 175 114561933 - Sfri_0751 - hypothetical protein 746 42.20 0 881460..882215 + 251 114561934 - Sfri_0752 - hypothetical protein 747 42.28 0 882227..883120 + 297 114561935 - Sfri_0753 - hypothetical protein 748 42.95 0 883550..883861 + 103 114561936 - Sfri_0754 - transposase IS3/IS911 family protein 749 42.31 0 883915..884727 + 270 114561937 - Sfri_0755 - integrase catalytic subunit 750 39.19 0 884915..885307 + 130 114561938 - Sfri_0756 - glyoxalase/bleomycin resistance protein/dioxygenase 751 44.23 0 885546..886775 + 409 114561939 - Sfri_0757 - sodium:dicarboxylate symporter 752 41.15 0 886809..888023 - 404 114561940 - Sfri_0758 - diguanylate cyclase 753 43.53 0 888658..889206 + 182 114561941 - Sfri_0760 - NUDIX hydrolase 754 46.64 +1 889308..890186 - 292 114561942 - Sfri_0761 - pyrroline-5-carboxylate reductase 755 42.07 0 890224..891471 - 415 114561943 - Sfri_0762 - gamma-glutamyl phosphate reductase 756 43.45 0 891468..892574 - 368 114561944 - Sfri_0763 - gamma-glutamyl kinase 757 41.95 0 892589..894085 - 498 114561945 - Sfri_0764 - sodium/proline symporter 758 42.30 0 895110..895778 + 222 114561946 - Sfri_0765 - transcriptional regulator, TetR family protein 759 46.75 +1 895826..896809 + 327 114561947 - Sfri_0766 - alcohol dehydrogenase 760 39.10 0 897038..899083 - 681 114561948 - Sfri_0767 - diguanylate cyclase/phosphodiesterase 761 38.79 -1 899088..899618 - 176 114561949 - Sfri_0768 - hypothetical protein 762 40.26 0 899627..901690 - 687 114561950 - Sfri_0769 - TonB-dependent receptor, plug 763 40.12 0 902012..902527 + 171 114561951 - Sfri_0770 - hypothetical protein 764 43.90 0 902892..905474 + 860 114561952 - Sfri_0771 - peptidase S45, penicillin amidase 765 41.90 0 906036..907505 + 489 114561953 - Sfri_0772 - carbon starvation protein CstA 766 43.79 0 907584..908798 - 404 114561954 - Sfri_0773 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 767 42.23 0 909042..910064 + 340 114561955 - Sfri_0774 - zinc carboxypeptidase-related protein 768 43.77 0 910084..910878 + 264 114561956 - Sfri_0775 - alpha/beta hydrolase fold 769 47.56 +1 911065..911964 - 299 114561957 - Sfri_0776 - transcriptional regulator, LysR family protein 770 43.23 0 911993..913579 - 528 114561958 - Sfri_0777 - deoxyribodipyrimidine photolyase-related protein 771 39.01 0 913591..913731 - 46 114561959 - Sfri_0778 - hypothetical protein 772 44.62 0 913721..915235 - 504 114561960 - Sfri_0779 - deoxyribodipyrimidine photo-lyase 773 48.20 +1 915440..916078 + 212 114561961 - Sfri_0780 - NAD-dependent epimerase/dehydratase 774 34.82 -2 916928..918748 + 606 114561962 - Sfri_0781 - KAP P-loop domain-containing protein 775 42.52 0 919350..920252 - 300 114561963 - Sfri_0783 - transcriptional regulator, LysR family protein 776 42.41 0 920452..921420 + 322 114561964 - Sfri_0784 - C4-dicarboxylate transporter/malic acid transport protein 777 44.51 0 921435..921908 + 157 114561965 - Sfri_0785 - ybaK/ebsC protein 778 41.74 0 922292..922993 - 233 114561966 - Sfri_0786 - hypothetical protein 779 43.85 0 923058..923903 - 281 114561967 - Sfri_0787 - pseudouridine synthase 780 42.08 0 924085..924861 + 258 114561968 - Sfri_0788 - prolipoprotein diacylglyceryl transferase 781 42.11 0 924971..925813 - 280 114561969 - Sfri_0789 - sulfotransferase 782 43.26 0 926338..927828 + 496 114561970 - Sfri_0790 - sulphate transporter 783 46.74 +1 927858..928715 + 285 114561971 - Sfri_0791 - UspA domain-containing protein 784 46.08 +1 929140..933360 - 1406 114561972 - Sfri_0792 - formate dehydrogenase, alpha subunit 785 42.40 0 933803..934519 - 238 114561973 - Sfri_0793 - hypothetical protein 786 44.37 0 934684..935589 - 301 114561974 - Sfri_0794 - transcriptional regulator, LysR family protein 787 43.14 0 935681..936496 + 271 114561975 - Sfri_0795 - hypothetical protein 788 41.39 0 936633..937526 + 297 114561976 - Sfri_0796 - bile acid:sodium symporter 789 42.22 0 937732..938856 - 374 114561977 - Sfri_0797 - diguanylate cyclase with PAS/PAC sensor 790 41.41 0 939390..939773 - 127 114561978 - Sfri_0798 - hypothetical protein 791 45.33 +1 939783..943091 - 1102 114561979 - Sfri_0799 - transcriptional regulator, CadC 792 40.68 0 943297..944262 - 321 114561980 - Sfri_0800 - 2-dehydropantoate 2-reductase 793 44.52 0 944402..945715 + 437 114561981 - Sfri_0801 - amidohydrolase 794 37.58 -1 946091..947056 + 321 114561982 - Sfri_0802 - diguanylate cyclase 795 41.83 0 947260..947706 - 148 114561983 - Sfri_0803 - transcriptional regulator, MarR family protein 796 44.80 0 947912..948940 + 342 114561984 - Sfri_0804 - alcohol dehydrogenase 797 41.59 0 948984..949661 + 225 114561985 - Sfri_0805 - ThiJ/PfpI domain-containing protein 798 39.94 0 949794..950414 + 206 114561986 - Sfri_0806 - glutathione S-transferase domain-containing protein 799 39.83 0 950638..951237 + 199 114561987 - Sfri_0807 - hypothetical protein 800 39.21 0 951227..952060 - 277 114561988 - Sfri_0808 - hypothetical protein 801 41.99 0 952126..953349 - 407 114561989 - Sfri_0809 - major facilitator transporter 802 44.30 0 953546..954949 + 467 114561990 - Sfri_0810 - hypothetical protein 803 45.53 +1 954993..956156 + 387 114561991 - Sfri_0811 - putative lipoprotein 804 45.55 +1 956299..957927 + 542 114561992 - Sfri_0812 - hypothetical protein 805 42.15 0 958120..958641 + 173 114561993 - Sfri_0813 - protoporphyrinogen oxidase 806 42.64 0 958645..959160 + 171 114561994 - Sfri_0814 - hypothetical protein 807 42.44 0 959231..960130 - 299 114561995 - Sfri_0815 - transcriptional regulator, LysR family protein 808 44.55 0 960263..961234 + 323 114561996 - Sfri_0816 - aldo/keto reductase 809 42.50 0 961308..963107 + 599 114561997 - Sfri_0817 - alpha amylase, catalytic region 810 39.88 0 963168..963824 - 218 114561998 - Sfri_0818 - DSBA oxidoreductase 811 41.36 0 964284..964943 - 219 114561999 - Sfri_0819 - heat shock protein DnaJ domain-containing protein 812 37.92 -1 965302..965868 + 188 114562000 - Sfri_0820 - hypoxanthine-guanine phosphoribosyltransferase 813 40.26 0 966001..967935 + 644 114562001 - Sfri_0821 - peptidase U32 814 40.43 0 968130..968453 + 107 114562002 - Sfri_0822 - hypothetical protein 815 43.84 0 968579..969244 + 221 114562003 - Sfri_0823 - hypothetical protein 816 42.83 0 969911..971890 + 659 114562004 - Sfri_0824 - TonB-dependent receptor, plug 817 39.22 0 972004..972750 + 248 114562005 - Sfri_0825 - putative signal transduction protein 818 42.75 0 972733..973635 - 300 114562006 - Sfri_0826 - transcriptional regulator, LysR family protein 819 36.96 -1 974405..974680 + 91 114562007 - Sfri_0829 - hypothetical protein 820 43.51 0 974702..975988 - 428 114562008 - Sfri_0830 - putative iron-sulfur cluster binding protein 821 37.42 -1 975972..977855 - 627 114562009 - Sfri_0831 - diguanylate cyclase 822 41.61 0 978274..978708 + 144 114562010 - Sfri_0832 - hypothetical protein 823 43.34 0 978865..980553 - 562 114562011 - Sfri_0833 - malate dehydrogenase 824 36.56 -1 980840..981304 - 154 114562012 - Sfri_0834 - hypothetical protein 825 44.31 0 981506..982771 - 421 114562013 - Sfri_0835 - putative manganese transporter 826 41.67 0 982784..983323 - 179 114562014 - Sfri_0836 - membrane-flanked domain-containing protein 827 43.69 0 983548..986115 + 855 114562015 - Sfri_0837 - TonB-dependent receptor 828 44.01 0 986163..986846 + 227 114562016 - Sfri_0838 - glutathione S-transferase domain-containing protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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