version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 684 38.79 -1 815553..816230 - 225 114561872 - Sfri_0689 - YheO domain-containing protein 685 40.80 0 816774..817148 + 124 114561873 - Sfri_0690 - hypothetical protein 686 40.31 0 817135..817593 + 152 114561874 - Sfri_0691 - ribosomal-protein-alanine acetyltransferase 687 43.48 0 817670..818635 - 321 114561875 - Sfri_0692 - lipoyl synthase 688 42.24 0 818635..819285 - 216 114561876 - Sfri_0693 - lipoate-protein ligase B 689 41.95 0 819389..819655 - 88 114561877 - Sfri_0694 - hypothetical protein 690 41.34 0 819811..821022 - 403 114561878 - Sfri_0695 - Serine-type D-Ala-D-Ala carboxypeptidase 691 40.59 0 821176..821988 - 270 114561879 - Sfri_0696 - rare lipoprotein A 692 40.63 0 821978..822991 - 337 114561880 - Sfri_0697 - lytic murein transglycosylase B 693 43.49 0 823006..824127 - 373 114561881 - Sfri_0698 - rod shape-determining protein RodA 694 42.65 0 824109..825965 - 618 114561882 - Sfri_0699 - peptidoglycan glycosyltransferase 695 46.50 +1 826095..826565 - 156 114561883 - Sfri_0700 - SPOUT methyltransferase superfamily protein 696 40.30 0 826565..826894 - 109 114561884 - Sfri_0701 - iojap-like protein 697 41.04 0 827056..827691 - 211 114561885 - Sfri_0702 - nicotinate (nicotinamide) nucleotide adenylyltransferase 698 42.32 0 827713..828747 - 344 114561886 - Sfri_0703 - DNA polymerase III, delta subunit 699 45.49 +1 828747..829256 - 169 114561887 - Sfri_0704 - rare lipoprotein B 700 44.44 0 829380..831998 - 872 114561888 leuS Sfri_0705 - leucyl-tRNA synthetase 701 38.52 -1 832092..832592 + 166 114561889 - Sfri_0706 - hypothetical protein 702 36.96 -1 832609..832911 - 100 114561890 - Sfri_0707 - hypothetical protein 703 40.35 0 833012..833524 - 170 114561891 - Sfri_0708 - methylation site containing protein 704 43.06 0 833537..835099 - 520 114561892 - Sfri_0709 - apolipoprotein N-acyltransferase 705 41.64 0 835103..835981 - 292 114561893 - Sfri_0710 - CBS domain-containing protein 706 44.59 0 836027..836497 - 156 114561894 - Sfri_0711 - putative metalloprotease 707 43.49 0 836494..837537 - 347 114561895 - Sfri_0712 - PhoH family protein 708 43.93 0 837730..839154 - 474 114561896 - Sfri_0713 - tRNA-i(6)A37 thiotransferase enzyme MiaB 709 38.24 -1 839238..839645 - 135 114561897 - Sfri_0714 - hypothetical protein 710 42.94 0 839857..841095 + 412 114561898 - Sfri_0715 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein 711 45.24 +1 841314..841901 + 195 114561899 - Sfri_0716 - peptidyl-tRNA hydrolase 712 43.32 0 841979..843070 + 363 114561900 - Sfri_0717 - translation-associated GTPase 713 44.06 0 844392..845426 + 344 114561901 - Sfri_0718 - patatin 714 46.10 +1 845685..846632 - 315 114561902 - Sfri_0719 - ribose-phosphate pyrophosphokinase 715 44.10 0 846723..847595 - 290 114561903 - Sfri_0720 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 716 42.48 0 847641..848252 - 203 114561904 - Sfri_0721 - outer membrane lipoprotein LolB 717 42.77 0 848490..849740 + 416 114561905 hemA Sfri_0722 - glutamyl-tRNA reductase 718 43.19 0 849755..850840 + 361 114561906 prfA Sfri_0723 - peptide chain release factor 1 719 44.09 0 850850..851704 + 284 114561907 - Sfri_0724 - modification methylase, HemK family protein 720 36.87 -1 851829..852224 + 131 114561908 - Sfri_0725 - invasion gene expression up-regulator, SirB 721 40.68 0 852235..853023 + 262 114561909 - Sfri_0726 - hypothetical protein 722 43.67 0 853217..854464 + 415 114561910 - Sfri_0727 - hypothetical protein 723 43.43 0 854482..855333 + 283 114561911 - Sfri_0728 - 2-dehydro-3-deoxyphosphooctonate aldolase 724 42.61 0 855503..856375 + 290 114561912 - Sfri_0729 - hypothetical protein 725 42.52 0 856470..857438 - 322 114561913 - Sfri_0730 - 2-dehydropantoate 2-reductase 726 36.41 -1 857445..857801 - 118 114561914 - Sfri_0731 - VanZ family protein 727 40.95 0 858140..858625 + 161 114561915 - Sfri_0732 - nucleotide-binding protein 728 42.12 0 859090..859476 + 128 114561916 - Sfri_0733 - hypothetical protein 729 39.41 0 859821..860396 - 191 114561917 - Sfri_0734 - OmpA domain-containing protein 730 41.78 0 861223..861435 + 70 114561918 - Sfri_0735 - cold-shock DNA-binding domain-containing protein 731 35.06 -2 861745..861975 + 76 114561919 - Sfri_0736 - hypothetical protein 732 36.18 -1 862520..863536 + 338 114561920 - Sfri_0737 - hypothetical protein 733 40.51 0 864240..866426 + 728 114561921 - Sfri_0738 - hypothetical protein 734 41.06 0 866514..868001 - 495 114561922 - Sfri_0739 - spore coat assembly protein-like protein 735 40.95 0 868349..869752 + 467 114561923 - Sfri_0740 - hypothetical protein 736 42.97 0 869889..870137 + 82 114561924 - Sfri_0741 - hypothetical protein 737 45.14 0 870214..871416 - 400 114561925 - Sfri_0742 - Rh family protein/ammonium transporter 738 47.35 +1 871832..873001 + 389 114561926 - Sfri_0743 - lipid-transfer protein 739 41.07 0 874696..875238 + 180 114561927 - Sfri_0745 - hypothetical protein 740 44.44 0 875419..876066 + 215 114561928 - Sfri_0746 - DSBA oxidoreductase 741 44.59 0 876116..878461 - 781 114561929 - Sfri_0747 - oxidoreductase alpha (molybdopterin) subunit 742 43.38 0 878454..879269 - 271 114561930 - Sfri_0748 - formate dehydrogenase family accessory protein FdhD 743 41.89 0 879404..880303 + 299 114561931 - Sfri_0749 - transcriptional regulator, LysR family protein 744 40.35 0 880644..880928 + 94 114561932 - Sfri_0750 - heat shock protein DnaJ domain-containing protein 745 41.86 0 880936..881463 + 175 114561933 - Sfri_0751 - hypothetical protein 746 42.20 0 881460..882215 + 251 114561934 - Sfri_0752 - hypothetical protein 747 42.28 0 882227..883120 + 297 114561935 - Sfri_0753 - hypothetical protein 748 42.95 0 883550..883861 + 103 114561936 - Sfri_0754 - transposase IS3/IS911 family protein 749 42.31 0 883915..884727 + 270 114561937 - Sfri_0755 - integrase catalytic subunit 750 39.19 0 884915..885307 + 130 114561938 - Sfri_0756 - glyoxalase/bleomycin resistance protein/dioxygenase 751 44.23 0 885546..886775 + 409 114561939 - Sfri_0757 - sodium:dicarboxylate symporter 752 41.15 0 886809..888023 - 404 114561940 - Sfri_0758 - diguanylate cyclase 753 43.53 0 888658..889206 + 182 114561941 - Sfri_0760 - NUDIX hydrolase 754 46.64 +1 889308..890186 - 292 114561942 - Sfri_0761 - pyrroline-5-carboxylate reductase 755 42.07 0 890224..891471 - 415 114561943 - Sfri_0762 - gamma-glutamyl phosphate reductase 756 43.45 0 891468..892574 - 368 114561944 - Sfri_0763 - gamma-glutamyl kinase 757 41.95 0 892589..894085 - 498 114561945 - Sfri_0764 - sodium/proline symporter 758 42.30 0 895110..895778 + 222 114561946 - Sfri_0765 - transcriptional regulator, TetR family protein 759 46.75 +1 895826..896809 + 327 114561947 - Sfri_0766 - alcohol dehydrogenase 760 39.10 0 897038..899083 - 681 114561948 - Sfri_0767 - diguanylate cyclase/phosphodiesterase 761 38.79 -1 899088..899618 - 176 114561949 - Sfri_0768 - hypothetical protein 762 40.26 0 899627..901690 - 687 114561950 - Sfri_0769 - TonB-dependent receptor, plug 763 40.12 0 902012..902527 + 171 114561951 - Sfri_0770 - hypothetical protein 764 43.90 0 902892..905474 + 860 114561952 - Sfri_0771 - peptidase S45, penicillin amidase 765 41.90 0 906036..907505 + 489 114561953 - Sfri_0772 - carbon starvation protein CstA 766 43.79 0 907584..908798 - 404 114561954 - Sfri_0773 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 767 42.23 0 909042..910064 + 340 114561955 - Sfri_0774 - zinc carboxypeptidase-related protein 768 43.77 0 910084..910878 + 264 114561956 - Sfri_0775 - alpha/beta hydrolase fold 769 47.56 +1 911065..911964 - 299 114561957 - Sfri_0776 - transcriptional regulator, LysR family protein 770 43.23 0 911993..913579 - 528 114561958 - Sfri_0777 - deoxyribodipyrimidine photolyase-related protein 771 39.01 0 913591..913731 - 46 114561959 - Sfri_0778 - hypothetical protein 772 44.62 0 913721..915235 - 504 114561960 - Sfri_0779 - deoxyribodipyrimidine photo-lyase 773 48.20 +1 915440..916078 + 212 114561961 - Sfri_0780 - NAD-dependent epimerase/dehydratase 774 34.82 -2 916928..918748 + 606 114561962 - Sfri_0781 - KAP P-loop domain-containing protein 775 42.52 0 919350..920252 - 300 114561963 - Sfri_0783 - transcriptional regulator, LysR family protein 776 42.41 0 920452..921420 + 322 114561964 - Sfri_0784 - C4-dicarboxylate transporter/malic acid transport protein 777 44.51 0 921435..921908 + 157 114561965 - Sfri_0785 - ybaK/ebsC protein 778 41.74 0 922292..922993 - 233 114561966 - Sfri_0786 - hypothetical protein 779 43.85 0 923058..923903 - 281 114561967 - Sfri_0787 - pseudouridine synthase 780 42.08 0 924085..924861 + 258 114561968 - Sfri_0788 - prolipoprotein diacylglyceryl transferase 781 42.11 0 924971..925813 - 280 114561969 - Sfri_0789 - sulfotransferase 782 43.26 0 926338..927828 + 496 114561970 - Sfri_0790 - sulphate transporter 783 46.74 +1 927858..928715 + 285 114561971 - Sfri_0791 - UspA domain-containing protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0