IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3930	 43.18	0	4731581..4732606	-	341	114565117	-	Sfri_3967	-	hypothetical protein
3931	 42.08	0	4732744..4733166	+	140	114565118	-	Sfri_3968	-	thioesterase superfamily protein
3932	 43.80	0	4733233..4733490	+	85	114565119	-	Sfri_3969	-	hypothetical protein
3933	 41.24	0	4733511..4733978	-	155	114565120	-	Sfri_3970	-	thioesterase superfamily protein
3934	 32.56	-2	4734204..4734719	-	171	114565121	-	Sfri_3971	-	hypothetical protein
3935	 38.96	-1	4734719..4735660	-	313	114565122	-	Sfri_3972	-	hypothetical protein
3936	 44.26	0	4735787..4737580	-	597	114565123	-	Sfri_3973	-	AMP-dependent synthetase and ligase
3937	 46.02	+1	4737707..4738999	-	430	114565124	-	Sfri_3974	-	hypothetical protein
3938	 44.83	0	4738996..4739865	-	289	114565125	-	Sfri_3975	-	ABC transporter related
3939	 49.74	+2	4739911..4740288	-	125	114565126	-	Sfri_3976	-	transcriptional regulator, GntR family protein
3940	 46.53	+1	4740383..4741981	+	532	114565127	-	Sfri_3977	-	TAP domain-containing protein
3941	 45.44	+1	4741984..4742718	+	244	114565128	-	Sfri_3978	-	ABC transporter related
3942	 42.33	0	4742718..4743851	+	377	114565129	-	Sfri_3979	-	ABC-2 type transporter
3943	 40.89	0	4744004..4744228	+	74	114565130	-	Sfri_3980	-	hypothetical protein
3944	 37.04	-1	4744281..4745843	-	520	114565131	-	Sfri_3981	-	diguanylate cyclase
3945	 44.38	0	4746064..4746597	-	177	114565132	mogA	Sfri_3982	-	molybdenum cofactor biosynthesis protein
3946	 43.37	0	4746915..4747412	+	165	114565133	-	Sfri_3983	-	methylation site containing protein
3947	 42.61	0	4747523..4748158	-	211	114565134	-	Sfri_3984	-	transcriptional regulator, TetR family protein
3948	 44.20	0	4748570..4749802	+	410	114565135	-	Sfri_3985	-	RND family efflux transporter MFP subunit
3949	 44.78	0	4749815..4752976	+	1053	114565136	-	Sfri_3986	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
3950	 44.27	0	4753067..4754026	-	319	114565137	-	Sfri_3987	-	ribokinase-like domain-containing protein
3951	 43.76	0	4754160..4756556	-	798	114565138	-	Sfri_3988	-	TonB-dependent receptor
3952	 40.95	0	4756825..4758045	-	406	114565139	-	Sfri_3989	-	major facilitator transporter
3953	 44.26	0	4758234..4759715	+	493	114565140	-	Sfri_3990	-	sucrose phosphorylase
3954	 43.02	0	4759846..4760877	-	343	114565141	-	Sfri_3991	-	transcriptional regulator, LacI family protein
3955	 41.46	0	4761018..4761608	-	196	114565142	-	Sfri_3992	-	NLP/P60 protein
3956	 42.91	0	4761669..4762253	-	194	114565143	-	Sfri_3993	-	transcriptional regulator, TetR family protein
3957	 41.03	0	4762638..4762910	-	90	114565144	-	Sfri_3994	-	hypothetical protein
3958	 40.62	0	4762991..4763539	-	182	114565145	-	Sfri_3995	-	transport-associated
3959	 42.83	0	4763930..4764466	-	178	114565146	-	Sfri_3996	-	hypothetical protein
3960	 43.64	0	4764677..4766044	+	455	114565147	-	Sfri_3997	-	sigma54 specific transcriptional regulator, Fis family protein
3961	 40.96	0	4766065..4767717	-	550	114565148	-	Sfri_3998	-	hypothetical protein
3962	 37.95	-1	4767934..4768128	-	64	114565149	-	Sfri_3999	-	hypothetical protein
3963	 41.24	0	4768208..4768384	-	58	114565150	-	Sfri_4000	-	hypothetical protein
3964	 43.02	0	4768712..4769929	-	405	114565151	-	Sfri_4001	-	major facilitator transporter
3965	 46.19	+1	4769935..4770945	-	336	114565152	-	Sfri_4002	-	glyceraldehyde-3-phosphate dehydrogenase
3966	 44.31	0	4771082..4772101	-	339	114565153	-	Sfri_4003	-	bile acid:sodium symporter
3967	 42.93	0	4772179..4772991	-	270	114565154	-	Sfri_4004	-	transcriptional regulator, ArsR family protein
3968	 40.27	0	4773208..4775298	-	696	114565155	-	Sfri_4005	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3969	 40.19	0	4775298..4777646	-	782	114565156	-	Sfri_4006	-	multi-sensor hybrid histidine kinase
3970	 37.96	-1	4777643..4778182	-	179	114565157	-	Sfri_4007	-	hypothetical protein
3971	 40.92	0	4778193..4780235	-	680	114565158	-	Sfri_4008	-	TonB-dependent receptor, plug
3972	 39.85	0	4780587..4781123	-	178	114565159	-	Sfri_4009	-	hypothetical protein
3973	 41.04	0	4781134..4783170	-	678	114565160	-	Sfri_4010	-	TonB-dependent receptor, plug
3974	 38.49	-1	4783766..4784017	+	83	114565161	-	Sfri_4011	-	transcriptional regulator/antitoxin, MazE
3975	 35.00	-2	4784242..4785741	-	499	114565162	-	Sfri_4012	-	hypothetical protein
3976	 42.31	0	4785780..4786592	-	270	114565163	-	Sfri_4013	-	integrase catalytic subunit
3977	 42.95	0	4786646..4786957	-	103	114565164	-	Sfri_4014	-	transposase IS3/IS911 family protein
3978	 37.69	-1	4787021..4787548	+	175	114565165	-	Sfri_4015	-	hypothetical protein
3979	 35.61	-2	4787575..4788936	+	453	114565166	-	Sfri_4016	-	hypothetical protein
3980	 44.16	0	4789127..4790308	-	393	114565167	-	Sfri_4017	-	hypothetical protein
3981	 45.72	+1	4790433..4791449	-	338	114565168	gpsA	Sfri_4018	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
3982	 41.14	0	4791453..4791926	-	157	114565169	-	Sfri_4019	-	preprotein translocase subunit SecB
3983	 37.70	-1	4792133..4792567	-	144	114565170	-	Sfri_4020	-	rhodanese domain-containing protein
3984	 43.58	0	4792819..4794360	+	513	114565171	-	Sfri_4021	-	phosphoglyceromutase
3985	 41.01	0	4794371..4795504	+	377	114565172	-	Sfri_4022	-	peptidase M23B
3986	 40.03	0	4795738..4796454	+	238	114565173	-	Sfri_4023	-	protein of unknown function DUF610, YibQ
3987	 37.94	-1	4796429..4796884	-	151	114565174	-	Sfri_4024	-	transcriptional regulator, BadM/Rrf2 family protein
3988	 45.24	+1	4796920..4797171	-	83	114565175	-	Sfri_4025	-	hypothetical protein
3989	 43.62	0	4797414..4798346	+	310	114565176	rihA	Sfri_4026	-	ribonucleoside hydrolase 1
3990	 41.94	0	4798447..4798899	+	150	114565177	-	Sfri_4027	-	hypothetical protein
3991	 41.67	0	4804828..4806255	-	475	114565178	-	Sfri_4028	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3992	 34.48	-2	4806332..4806679	+	115	114565179	-	Sfri_4029	-	hypothetical protein
3993	 45.36	+1	4806779..4807693	+	304	114565180	-	Sfri_4030	-	naphthoate synthase
3994	 38.74	-1	4807891..4808112	+	73	114565181	-	Sfri_4031	-	membrane protein-like protein
3995	 40.32	0	4808891..4810492	+	533	114565182	-	Sfri_4032	-	methyl-accepting chemotaxis sensory transducer
3996	 42.13	0	4810511..4811272	-	253	114565183	-	Sfri_4033	-	PepSY-associated TM helix domain-containing protein
3997	 40.30	0	4811314..4811844	-	176	114565184	-	Sfri_4034	-	FMN-binding domain-containing protein
3998	 41.24	0	4811959..4813134	-	391	114565185	-	Sfri_4035	-	phosphate-selective porin O and P
3999	 39.64	0	4813681..4814346	+	221	114565186	-	Sfri_4036	-	histidine kinase
4000	 46.31	+1	4814835..4816028	+	397	114565187	-	Sfri_4037	-	PUA domain-containing protein
4001	 37.76	-1	4816195..4816533	-	112	114565188	-	Sfri_4038	-	hypothetical protein
4002	 32.30	-2	4816682..4817743	-	353	114565189	-	Sfri_4039	-	hypothetical protein
4003	 42.62	0	4817885..4819714	-	609	114565190	-	Sfri_4040	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
4004	 45.01	0	4819752..4820522	-	256	114565191	-	Sfri_4041	-	transcriptional regulator, DeoR family protein
4005	 40.21	0	4820709..4822802	-	697	114565192	-	Sfri_4042	-	TonB-dependent siderophore receptor
4006	 42.49	0	4823072..4824436	-	454	114565193	-	Sfri_4043	-	UDP-N-acetylglucosamine pyrophosphorylase
4007	 40.33	0	4824585..4825013	-	142	114565194	-	Sfri_4044	-	ATP synthase F1, epsilon subunit
4008	 45.62	+1	4825050..4826441	-	463	114565195	-	Sfri_4045	-	F0F1 ATP synthase subunit beta
4009	 45.18	0	4826477..4827337	-	286	114565196	-	Sfri_4046	-	F0F1 ATP synthase subunit gamma
4010	 44.10	0	4827391..4828932	-	513	114565197	-	Sfri_4047	-	F0F1 ATP synthase subunit alpha
4011	 43.07	0	4828947..4829480	-	177	114565198	-	Sfri_4048	-	F0F1 ATP synthase subunit delta
4012	 42.25	0	4829497..4829967	-	156	114565199	-	Sfri_4049	-	F0F1 ATP synthase subunit B
4013	 42.06	0	4830005..4830256	-	83	114565200	-	Sfri_4050	-	F0F1 ATP synthase subunit C
4014	 38.87	-1	4830322..4831116	-	264	114565201	-	Sfri_4051	-	F0F1 ATP synthase subunit A
4015	 40.26	0	4831129..4831518	-	129	114565202	-	Sfri_4052	-	ATP synthase I chain
4016	 39.12	0	4831738..4832619	-	293	114565203	-	Sfri_4053	-	parB-like partition proteins
4017	 41.70	0	4832629..4833417	-	262	114565204	-	Sfri_4054	-	cobyrinic acid a,c-diamide synthase
4018	 36.92	-1	4833480..4834121	-	213	114565205	gidB	Sfri_4055	-	glucose-inhibited division protein B
4019	 40.42	0	4834213..4836102	-	629	114565206	-	Sfri_4056	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
4020	 39.91	0	4836574..4837014	-	146	114565207	-	Sfri_4057	-	flavodoxin
4021	 42.32	0	4837298..4838143	-	281	114565208	-	Sfri_4058	-	carboxylesterase
4022	 43.77	0	4838217..4839347	-	376	114565209	-	Sfri_4059	-	alcohol dehydrogenase
4023	 41.75	0	4839489..4840355	+	288	114565210	-	Sfri_4060	-	transcriptional regulator, LysR family protein
4024	 41.30	0	4840407..4841021	-	204	114565211	-	Sfri_4061	-	DNA polymerase III, epsilon subunit
4025	 44.20	0	4841032..4842393	-	453	114565212	trmE	Sfri_4062	-	tRNA modification GTPase TrmE
4026	 40.64	0	4842475..4844103	-	542	114565213	-	Sfri_4063	-	60 kDa inner membrane insertion protein
4027	 42.75	0	4844107..4844361	-	84	114565214	-	Sfri_4064	-	hypothetical protein
4028	 39.78	0	4844328..4844684	-	118	114565215	-	Sfri_4065	-	ribonuclease P protein component
4029	 54.35	+2	4844697..4844834	-	45	114565216	rpmH	Sfri_4066	-	50S ribosomal protein L34
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.