version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3897 46.61 +1 4694218..4695249 - 343 114565084 - Sfri_3934 - glycosyl transferase family protein 3898 44.44 0 4695360..4696088 + 242 114565085 - Sfri_3935 - 3-deoxy-D-manno-octulosonic-acid kinase 3899 43.71 0 4696178..4697440 - 420 114565086 - Sfri_3936 - 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 3900 39.67 0 4697558..4698220 + 220 114565087 - Sfri_3937 - transcriptional regulator, TetR family protein 3901 44.47 0 4698548..4699741 + 397 114565088 - Sfri_3938 - 2-amino-3-ketobutyrate coenzyme A ligase 3902 43.96 0 4699828..4700853 + 341 114565089 tdh Sfri_3939 - L-threonine 3-dehydrogenase 3903 43.37 0 4700979..4701287 + 102 114565090 - Sfri_3940 - rhodanese domain-containing protein 3904 43.78 0 4701284..4702135 + 283 114565091 - Sfri_3941 - rhomboid family protein 3905 42.51 0 4702218..4702871 - 217 114565092 - Sfri_3942 - isoprenoid biosynthesis protein 3906 43.78 0 4703403..4706159 + 918 114565093 - Sfri_3943 - DNA polymerase I 3907 44.30 0 4706897..4707571 - 224 114565094 - Sfri_3944 - GTPase EngB 3908 44.07 0 4707835..4708458 + 207 114565095 - Sfri_3945 - cytochrome c, class I 3909 39.67 0 4709299..4709961 + 220 114565096 - Sfri_3946 - hypothetical protein 3910 41.89 0 4710017..4710565 + 182 114565097 - Sfri_3947 - hypothetical protein 3911 41.88 0 4710661..4711128 + 155 114565098 - Sfri_3948 - hypothetical protein 3912 43.60 0 4711490..4712044 + 184 114565099 - Sfri_3949 - phospholipid/glycerol acyltransferase 3913 44.91 0 4712143..4713567 - 474 114565100 - Sfri_3950 - alpha/beta hydrolase fold 3914 42.40 0 4713643..4714911 - 422 114565101 - Sfri_3951 - MscS mechanosensitive ion channel 3915 46.65 +1 4715257..4716795 - 512 114565102 - Sfri_3952 - histidine ammonia-lyase 3916 48.59 +2 4716799..4718469 - 556 114565103 - Sfri_3953 - urocanate hydratase 3917 46.10 +1 4718565..4719308 - 247 114565104 - Sfri_3954 - transcriptional regulator, histidine utilization repressor, GntR family protein 3918 46.15 +1 4719406..4720638 + 410 114565105 - Sfri_3955 - imidazolonepropionase 3919 43.30 0 4720958..4721740 + 260 114565106 - Sfri_3956 - haloacid dehalogenase, type II 3920 46.45 +1 4721921..4723582 + 553 114565107 - Sfri_3957 - amidohydrolase 3 3921 42.49 0 4723737..4724009 + 90 114565108 - Sfri_3958 - hypothetical protein 3922 40.61 0 4724009..4724503 + 164 114565109 - Sfri_3959 - GCN5-related N-acetyltransferase 3923 46.98 +1 4724855..4725682 - 275 114565110 - Sfri_3960 - integrase catalytic subunit 3924 47.57 +1 4725676..4725942 - 88 114565111 - Sfri_3961 - transposase IS3/IS911 family protein 3925 33.73 -2 4725978..4726481 - 167 114565112 - Sfri_3962 - hypothetical protein 3926 38.33 -1 4726988..4727227 - 79 114565113 - Sfri_3963 - hypothetical protein 3927 46.46 +1 4727409..4729274 + 621 114565114 - Sfri_3964 - hypothetical protein 3928 41.71 0 4729417..4730622 - 401 114565115 - Sfri_3965 - hypothetical protein 3929 42.14 0 4730835..4731515 + 226 114565116 - Sfri_3966 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 3930 43.18 0 4731581..4732606 - 341 114565117 - Sfri_3967 - hypothetical protein 3931 42.08 0 4732744..4733166 + 140 114565118 - Sfri_3968 - thioesterase superfamily protein 3932 43.80 0 4733233..4733490 + 85 114565119 - Sfri_3969 - hypothetical protein 3933 41.24 0 4733511..4733978 - 155 114565120 - Sfri_3970 - thioesterase superfamily protein 3934 32.56 -2 4734204..4734719 - 171 114565121 - Sfri_3971 - hypothetical protein 3935 38.96 -1 4734719..4735660 - 313 114565122 - Sfri_3972 - hypothetical protein 3936 44.26 0 4735787..4737580 - 597 114565123 - Sfri_3973 - AMP-dependent synthetase and ligase 3937 46.02 +1 4737707..4738999 - 430 114565124 - Sfri_3974 - hypothetical protein 3938 44.83 0 4738996..4739865 - 289 114565125 - Sfri_3975 - ABC transporter related 3939 49.74 +2 4739911..4740288 - 125 114565126 - Sfri_3976 - transcriptional regulator, GntR family protein 3940 46.53 +1 4740383..4741981 + 532 114565127 - Sfri_3977 - TAP domain-containing protein 3941 45.44 +1 4741984..4742718 + 244 114565128 - Sfri_3978 - ABC transporter related 3942 42.33 0 4742718..4743851 + 377 114565129 - Sfri_3979 - ABC-2 type transporter 3943 40.89 0 4744004..4744228 + 74 114565130 - Sfri_3980 - hypothetical protein 3944 37.04 -1 4744281..4745843 - 520 114565131 - Sfri_3981 - diguanylate cyclase 3945 44.38 0 4746064..4746597 - 177 114565132 mogA Sfri_3982 - molybdenum cofactor biosynthesis protein 3946 43.37 0 4746915..4747412 + 165 114565133 - Sfri_3983 - methylation site containing protein 3947 42.61 0 4747523..4748158 - 211 114565134 - Sfri_3984 - transcriptional regulator, TetR family protein 3948 44.20 0 4748570..4749802 + 410 114565135 - Sfri_3985 - RND family efflux transporter MFP subunit 3949 44.78 0 4749815..4752976 + 1053 114565136 - Sfri_3986 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein 3950 44.27 0 4753067..4754026 - 319 114565137 - Sfri_3987 - ribokinase-like domain-containing protein 3951 43.76 0 4754160..4756556 - 798 114565138 - Sfri_3988 - TonB-dependent receptor 3952 40.95 0 4756825..4758045 - 406 114565139 - Sfri_3989 - major facilitator transporter 3953 44.26 0 4758234..4759715 + 493 114565140 - Sfri_3990 - sucrose phosphorylase 3954 43.02 0 4759846..4760877 - 343 114565141 - Sfri_3991 - transcriptional regulator, LacI family protein 3955 41.46 0 4761018..4761608 - 196 114565142 - Sfri_3992 - NLP/P60 protein 3956 42.91 0 4761669..4762253 - 194 114565143 - Sfri_3993 - transcriptional regulator, TetR family protein 3957 41.03 0 4762638..4762910 - 90 114565144 - Sfri_3994 - hypothetical protein 3958 40.62 0 4762991..4763539 - 182 114565145 - Sfri_3995 - transport-associated 3959 42.83 0 4763930..4764466 - 178 114565146 - Sfri_3996 - hypothetical protein 3960 43.64 0 4764677..4766044 + 455 114565147 - Sfri_3997 - sigma54 specific transcriptional regulator, Fis family protein 3961 40.96 0 4766065..4767717 - 550 114565148 - Sfri_3998 - hypothetical protein 3962 37.95 -1 4767934..4768128 - 64 114565149 - Sfri_3999 - hypothetical protein 3963 41.24 0 4768208..4768384 - 58 114565150 - Sfri_4000 - hypothetical protein 3964 43.02 0 4768712..4769929 - 405 114565151 - Sfri_4001 - major facilitator transporter 3965 46.19 +1 4769935..4770945 - 336 114565152 - Sfri_4002 - glyceraldehyde-3-phosphate dehydrogenase 3966 44.31 0 4771082..4772101 - 339 114565153 - Sfri_4003 - bile acid:sodium symporter 3967 42.93 0 4772179..4772991 - 270 114565154 - Sfri_4004 - transcriptional regulator, ArsR family protein 3968 40.27 0 4773208..4775298 - 696 114565155 - Sfri_4005 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3969 40.19 0 4775298..4777646 - 782 114565156 - Sfri_4006 - multi-sensor hybrid histidine kinase 3970 37.96 -1 4777643..4778182 - 179 114565157 - Sfri_4007 - hypothetical protein 3971 40.92 0 4778193..4780235 - 680 114565158 - Sfri_4008 - TonB-dependent receptor, plug 3972 39.85 0 4780587..4781123 - 178 114565159 - Sfri_4009 - hypothetical protein 3973 41.04 0 4781134..4783170 - 678 114565160 - Sfri_4010 - TonB-dependent receptor, plug 3974 38.49 -1 4783766..4784017 + 83 114565161 - Sfri_4011 - transcriptional regulator/antitoxin, MazE 3975 35.00 -2 4784242..4785741 - 499 114565162 - Sfri_4012 - hypothetical protein 3976 42.31 0 4785780..4786592 - 270 114565163 - Sfri_4013 - integrase catalytic subunit 3977 42.95 0 4786646..4786957 - 103 114565164 - Sfri_4014 - transposase IS3/IS911 family protein 3978 37.69 -1 4787021..4787548 + 175 114565165 - Sfri_4015 - hypothetical protein 3979 35.61 -2 4787575..4788936 + 453 114565166 - Sfri_4016 - hypothetical protein 3980 44.16 0 4789127..4790308 - 393 114565167 - Sfri_4017 - hypothetical protein 3981 45.72 +1 4790433..4791449 - 338 114565168 gpsA Sfri_4018 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3982 41.14 0 4791453..4791926 - 157 114565169 - Sfri_4019 - preprotein translocase subunit SecB 3983 37.70 -1 4792133..4792567 - 144 114565170 - Sfri_4020 - rhodanese domain-containing protein 3984 43.58 0 4792819..4794360 + 513 114565171 - Sfri_4021 - phosphoglyceromutase 3985 41.01 0 4794371..4795504 + 377 114565172 - Sfri_4022 - peptidase M23B 3986 40.03 0 4795738..4796454 + 238 114565173 - Sfri_4023 - protein of unknown function DUF610, YibQ 3987 37.94 -1 4796429..4796884 - 151 114565174 - Sfri_4024 - transcriptional regulator, BadM/Rrf2 family protein 3988 45.24 +1 4796920..4797171 - 83 114565175 - Sfri_4025 - hypothetical protein 3989 43.62 0 4797414..4798346 + 310 114565176 rihA Sfri_4026 - ribonucleoside hydrolase 1 3990 41.94 0 4798447..4798899 + 150 114565177 - Sfri_4027 - hypothetical protein 3991 41.67 0 4804828..4806255 - 475 114565178 - Sfri_4028 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3992 34.48 -2 4806332..4806679 + 115 114565179 - Sfri_4029 - hypothetical protein 3993 45.36 +1 4806779..4807693 + 304 114565180 - Sfri_4030 - naphthoate synthase 3994 38.74 -1 4807891..4808112 + 73 114565181 - Sfri_4031 - membrane protein-like protein 3995 40.32 0 4808891..4810492 + 533 114565182 - Sfri_4032 - methyl-accepting chemotaxis sensory transducer 3996 42.13 0 4810511..4811272 - 253 114565183 - Sfri_4033 - PepSY-associated TM helix domain-containing protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0