version 1.0
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257 4029 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3862 43.83 0 4655033..4655842 + 269 114565049 - Sfri_3899 - hypothetical protein 3863 43.61 0 4655868..4656626 + 252 114565050 - Sfri_3900 - hypothetical protein 3864 43.36 0 4656670..4657347 + 225 114565051 - Sfri_3901 - two component transcriptional regulator, winged helix family protein 3865 43.70 0 4657311..4658651 + 446 114565052 - Sfri_3902 - periplasmic sensor signal transduction histidine kinase 3866 45.18 0 4658728..4660263 - 511 114565053 - Sfri_3903 - transcriptional regulator, XRE family protein 3867 42.97 0 4660411..4660929 + 172 114565054 - Sfri_3904 - malate synthase 3868 43.92 0 4661078..4662541 - 487 114565055 - Sfri_3905 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3869 44.49 0 4662715..4664157 - 480 114565056 - Sfri_3906 - transcriptional regulator, Fis family protein 3870 41.98 0 4664334..4664900 - 188 114565057 - Sfri_3907 - paraquat-inducible protein A 3871 42.56 0 4665127..4665798 + 223 114565058 - Sfri_3908 - hypothetical protein 3872 41.01 0 4665800..4668130 + 776 114565059 - Sfri_3909 - diguanylate cyclase/phosphodiesterase 3873 42.82 0 4668130..4668972 + 280 114565060 - Sfri_3910 - hypothetical protein 3874 39.58 0 4668972..4669403 + 143 114565061 - Sfri_3911 - globin 3875 39.70 0 4669435..4670628 - 397 114565062 - Sfri_3912 - metal dependent phosphohydrolase 3876 42.30 0 4670949..4672331 + 460 114565063 - Sfri_3913 - isochorismate synthases 3877 42.29 0 4672636..4673316 + 226 114565064 - Sfri_3914 - hypothetical protein 3878 40.56 0 4674010..4676154 - 714 114565065 - Sfri_3915 - periplasmic sensor signal transduction histidine kinase 3879 44.20 0 4676157..4677545 - 462 114565066 - Sfri_3916 - two component, sigma54 specific, transcriptional regulator, Fis family protein 3880 41.09 0 4677840..4678664 + 274 114565067 - Sfri_3917 - putative sulfate transport system substrate-binding protein 3881 43.79 0 4678661..4679368 + 235 114565068 - Sfri_3918 - binding-protein-dependent transport systems inner membrane component 3882 43.33 0 4679370..4680119 + 249 114565069 - Sfri_3919 - ABC transporter related 3883 43.15 0 4680103..4680693 + 196 114565070 - Sfri_3920 - molybdopterin-guanine dinucleotide biosynthesis protein A 3884 44.55 0 4680711..4682528 + 605 114565071 - Sfri_3921 - molybdopterin-guanine dinucleotide biosynthesis protein B 3885 43.97 0 4682537..4683523 + 328 114565072 - Sfri_3922 - molybdenum cofactor biosynthesis protein A 3886 39.43 0 4683630..4684088 + 152 114565073 - Sfri_3923 - hypothetical protein 3887 44.98 0 4684098..4684913 + 271 114565074 - Sfri_3924 - formamidopyrimidine-DNA glycosylase 3888 42.73 0 4685008..4686507 - 499 114565075 - Sfri_3925 - hypothetical protein 3889 42.80 0 4686512..4687018 - 168 114565076 coaD Sfri_3926 - phosphopantetheine adenylyltransferase 3890 36.39 -1 4687124..4687876 - 250 114565077 - Sfri_3927 - glycosyl transferase family protein 3891 38.32 -1 4688380..4689381 + 333 114565078 - Sfri_3928 - ADP-heptose--lipooligosaccharide heptosyltransferase III 3892 40.15 0 4689438..4690391 + 317 114565079 - Sfri_3929 - ADP-L-glycero-D-manno-heptose-6-epimerase 3893 35.62 -2 4690492..4690884 - 130 114565080 - Sfri_3930 - cytidyltransferase-like protein 3894 37.77 -1 4690893..4691951 - 352 114565081 - Sfri_3931 - CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 3895 37.19 -1 4692170..4693285 + 371 114565082 - Sfri_3932 - ADP-heptose:LPS heptosyltransferase-like protein 3896 36.28 -1 4693327..4694175 + 282 114565083 - Sfri_3933 - glycosyl transferase family protein 3897 46.61 +1 4694218..4695249 - 343 114565084 - Sfri_3934 - glycosyl transferase family protein 3898 44.44 0 4695360..4696088 + 242 114565085 - Sfri_3935 - 3-deoxy-D-manno-octulosonic-acid kinase 3899 43.71 0 4696178..4697440 - 420 114565086 - Sfri_3936 - 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 3900 39.67 0 4697558..4698220 + 220 114565087 - Sfri_3937 - transcriptional regulator, TetR family protein 3901 44.47 0 4698548..4699741 + 397 114565088 - Sfri_3938 - 2-amino-3-ketobutyrate coenzyme A ligase 3902 43.96 0 4699828..4700853 + 341 114565089 tdh Sfri_3939 - L-threonine 3-dehydrogenase 3903 43.37 0 4700979..4701287 + 102 114565090 - Sfri_3940 - rhodanese domain-containing protein 3904 43.78 0 4701284..4702135 + 283 114565091 - Sfri_3941 - rhomboid family protein 3905 42.51 0 4702218..4702871 - 217 114565092 - Sfri_3942 - isoprenoid biosynthesis protein 3906 43.78 0 4703403..4706159 + 918 114565093 - Sfri_3943 - DNA polymerase I 3907 44.30 0 4706897..4707571 - 224 114565094 - Sfri_3944 - GTPase EngB 3908 44.07 0 4707835..4708458 + 207 114565095 - Sfri_3945 - cytochrome c, class I 3909 39.67 0 4709299..4709961 + 220 114565096 - Sfri_3946 - hypothetical protein 3910 41.89 0 4710017..4710565 + 182 114565097 - Sfri_3947 - hypothetical protein 3911 41.88 0 4710661..4711128 + 155 114565098 - Sfri_3948 - hypothetical protein 3912 43.60 0 4711490..4712044 + 184 114565099 - Sfri_3949 - phospholipid/glycerol acyltransferase 3913 44.91 0 4712143..4713567 - 474 114565100 - Sfri_3950 - alpha/beta hydrolase fold 3914 42.40 0 4713643..4714911 - 422 114565101 - Sfri_3951 - MscS mechanosensitive ion channel 3915 46.65 +1 4715257..4716795 - 512 114565102 - Sfri_3952 - histidine ammonia-lyase 3916 48.59 +2 4716799..4718469 - 556 114565103 - Sfri_3953 - urocanate hydratase 3917 46.10 +1 4718565..4719308 - 247 114565104 - Sfri_3954 - transcriptional regulator, histidine utilization repressor, GntR family protein 3918 46.15 +1 4719406..4720638 + 410 114565105 - Sfri_3955 - imidazolonepropionase 3919 43.30 0 4720958..4721740 + 260 114565106 - Sfri_3956 - haloacid dehalogenase, type II 3920 46.45 +1 4721921..4723582 + 553 114565107 - Sfri_3957 - amidohydrolase 3 3921 42.49 0 4723737..4724009 + 90 114565108 - Sfri_3958 - hypothetical protein 3922 40.61 0 4724009..4724503 + 164 114565109 - Sfri_3959 - GCN5-related N-acetyltransferase 3923 46.98 +1 4724855..4725682 - 275 114565110 - Sfri_3960 - integrase catalytic subunit 3924 47.57 +1 4725676..4725942 - 88 114565111 - Sfri_3961 - transposase IS3/IS911 family protein 3925 33.73 -2 4725978..4726481 - 167 114565112 - Sfri_3962 - hypothetical protein 3926 38.33 -1 4726988..4727227 - 79 114565113 - Sfri_3963 - hypothetical protein 3927 46.46 +1 4727409..4729274 + 621 114565114 - Sfri_3964 - hypothetical protein 3928 41.71 0 4729417..4730622 - 401 114565115 - Sfri_3965 - hypothetical protein 3929 42.14 0 4730835..4731515 + 226 114565116 - Sfri_3966 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 3930 43.18 0 4731581..4732606 - 341 114565117 - Sfri_3967 - hypothetical protein 3931 42.08 0 4732744..4733166 + 140 114565118 - Sfri_3968 - thioesterase superfamily protein 3932 43.80 0 4733233..4733490 + 85 114565119 - Sfri_3969 - hypothetical protein 3933 41.24 0 4733511..4733978 - 155 114565120 - Sfri_3970 - thioesterase superfamily protein 3934 32.56 -2 4734204..4734719 - 171 114565121 - Sfri_3971 - hypothetical protein 3935 38.96 -1 4734719..4735660 - 313 114565122 - Sfri_3972 - hypothetical protein 3936 44.26 0 4735787..4737580 - 597 114565123 - Sfri_3973 - AMP-dependent synthetase and ligase 3937 46.02 +1 4737707..4738999 - 430 114565124 - Sfri_3974 - hypothetical protein 3938 44.83 0 4738996..4739865 - 289 114565125 - Sfri_3975 - ABC transporter related 3939 49.74 +2 4739911..4740288 - 125 114565126 - Sfri_3976 - transcriptional regulator, GntR family protein 3940 46.53 +1 4740383..4741981 + 532 114565127 - Sfri_3977 - TAP domain-containing protein 3941 45.44 +1 4741984..4742718 + 244 114565128 - Sfri_3978 - ABC transporter related 3942 42.33 0 4742718..4743851 + 377 114565129 - Sfri_3979 - ABC-2 type transporter 3943 40.89 0 4744004..4744228 + 74 114565130 - Sfri_3980 - hypothetical protein 3944 37.04 -1 4744281..4745843 - 520 114565131 - Sfri_3981 - diguanylate cyclase 3945 44.38 0 4746064..4746597 - 177 114565132 mogA Sfri_3982 - molybdenum cofactor biosynthesis protein 3946 43.37 0 4746915..4747412 + 165 114565133 - Sfri_3983 - methylation site containing protein 3947 42.61 0 4747523..4748158 - 211 114565134 - Sfri_3984 - transcriptional regulator, TetR family protein 3948 44.20 0 4748570..4749802 + 410 114565135 - Sfri_3985 - RND family efflux transporter MFP subunit 3949 44.78 0 4749815..4752976 + 1053 114565136 - Sfri_3986 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein 3950 44.27 0 4753067..4754026 - 319 114565137 - Sfri_3987 - ribokinase-like domain-containing protein 3951 43.76 0 4754160..4756556 - 798 114565138 - Sfri_3988 - TonB-dependent receptor 3952 40.95 0 4756825..4758045 - 406 114565139 - Sfri_3989 - major facilitator transporter 3953 44.26 0 4758234..4759715 + 493 114565140 - Sfri_3990 - sucrose phosphorylase 3954 43.02 0 4759846..4760877 - 343 114565141 - Sfri_3991 - transcriptional regulator, LacI family protein 3955 41.46 0 4761018..4761608 - 196 114565142 - Sfri_3992 - NLP/P60 protein 3956 42.91 0 4761669..4762253 - 194 114565143 - Sfri_3993 - transcriptional regulator, TetR family protein 3957 41.03 0 4762638..4762910 - 90 114565144 - Sfri_3994 - hypothetical protein 3958 40.62 0 4762991..4763539 - 182 114565145 - Sfri_3995 - transport-associated 3959 42.83 0 4763930..4764466 - 178 114565146 - Sfri_3996 - hypothetical protein 3960 43.64 0 4764677..4766044 + 455 114565147 - Sfri_3997 - sigma54 specific transcriptional regulator, Fis family protein 3961 40.96 0 4766065..4767717 - 550 114565148 - Sfri_3998 - hypothetical protein 42.09 MEAN 3.12 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0