IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3746	 44.48	0	4501586..4502464	+	292	114564933	-	Sfri_3781	-	nicotinate-nucleotide pyrophosphorylase
3747	 40.94	0	4503464..4503910	+	148	114564934	-	Sfri_3782	-	methylation site containing protein
3748	 42.77	0	4504003..4505709	+	568	114564935	-	Sfri_3783	-	type IV-A pilus assembly ATPase PilB
3749	 41.51	0	4505817..4507076	+	419	114564936	-	Sfri_3784	-	type II secretion system protein
3750	 41.96	0	4507106..4508032	+	308	114564937	-	Sfri_3785	-	prepilin peptidase
3751	 42.06	0	4508029..4508658	+	209	114564938	-	Sfri_3786	-	dephospho-CoA kinase
3752	 38.64	-1	4508651..4509385	+	244	114564939	-	Sfri_3787	-	hypothetical protein
3753	 40.18	0	4509422..4509640	+	72	114564940	-	Sfri_3788	-	hypothetical protein
3754	 39.14	0	4509664..4510059	+	131	114564941	-	Sfri_3789	-	mutator MutT protein
3755	 45.69	+1	4510983..4511516	-	177	114564942	-	Sfri_3792	-	ISSod10, transposase OrfB
3756	 40.00	0	4511530..4512009	-	159	114564943	-	Sfri_3793	-	ISSod10, transposase OrfA
3757	 46.18	+1	4518767..4519303	-	178	114564944	-	Sfri_3794	-	ISSod10, transposase OrfB
3758	 40.42	0	4519317..4519796	-	159	114564945	-	Sfri_3795	-	ISSod10, transposase OrfA
3759	 41.20	0	4526231..4528951	-	906	114564946	-	Sfri_3796	-	preprotein translocase subunit SecA
3760	 43.11	0	4529010..4529909	-	299	114564947	-	Sfri_3797	-	peptidase M23B
3761	 43.05	0	4529937..4530389	+	150	114564948	-	Sfri_3798	-	hypothetical protein
3762	 42.89	0	4530394..4531314	-	306	114564949	lpxC	Sfri_3799	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3763	 46.36	+1	4531525..4532691	-	388	114564950	-	Sfri_3800	-	cell division protein FtsZ
3764	 44.82	0	4532718..4533953	-	411	114564951	-	Sfri_3801	-	cell division protein FtsA
3765	 40.73	0	4533950..4534720	-	256	114564952	-	Sfri_3802	-	polypeptide-transport-associated domain-containing protein
3766	 44.51	0	4534842..4536299	-	485	114564953	-	Sfri_3803	-	UDP-N-acetylmuramate--alanine ligase
3767	 43.84	0	4536301..4537404	-	367	114564954	-	Sfri_3804	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3768	 44.94	0	4537404..4538618	-	404	114564955	-	Sfri_3805	-	cell division protein FtsW
3769	 44.14	0	4538608..4539930	-	440	114564956	-	Sfri_3806	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
3770	 43.67	0	4539953..4541035	-	360	114564957	-	Sfri_3807	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3771	 44.78	0	4541036..4542424	-	462	114564958	-	Sfri_3808	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
3772	 43.33	0	4542421..4543911	-	496	114564959	-	Sfri_3809	-	UDP-N-acetylmuramyl-tripeptide synthetases
3773	 44.43	0	4543898..4545646	-	582	114564960	-	Sfri_3810	-	peptidoglycan glycosyltransferase
3774	 42.86	0	4545658..4545972	-	104	114564961	-	Sfri_3811	-	cell division protein FtsL
3775	 43.31	0	4545987..4546928	-	313	114564962	mraW	Sfri_3812	-	S-adenosyl-methyltransferase MraW
3776	 44.23	0	4546954..4547412	-	152	114564963	-	Sfri_3813	-	cell division protein MraZ
3777	 46.11	+1	4548550..4548870	+	106	114564964	-	Sfri_3814	-	hypothetical protein
3778	 45.89	+1	4548883..4550379	-	498	114564965	-	Sfri_3815	-	glycerol kinase
3779	 44.86	0	4550575..4551927	-	450	114564966	-	Sfri_3816	-	membrane protein involved in aromatic hydrocarbon degradation
3780	 42.24	0	4552406..4553011	-	201	114564967	-	Sfri_3817	-	isopropylmalate isomerase small subunit
3781	 46.50	+1	4553031..4554443	-	470	114564968	-	Sfri_3818	-	isopropylmalate isomerase large subunit
3782	 45.11	0	4554443..4555537	-	364	114564969	-	Sfri_3819	-	3-isopropylmalate dehydrogenase
3783	 43.21	0	4555534..4557102	-	522	114564970	-	Sfri_3820	-	2-isopropylmalate synthase
3784	 38.27	-1	4557707..4559470	+	587	114564971	-	Sfri_3821	-	hypothetical protein
3785	 44.16	0	4559475..4561322	-	615	114564972	-	Sfri_3822	-	ATP-dependent DNA helicase RecQ
3786	 43.44	0	4561524..4561988	+	154	114564973	-	Sfri_3823	-	hypothetical protein
3787	 42.24	0	4562113..4563021	+	302	114564974	-	Sfri_3824	-	transporter DMT superfamily protein
3788	 43.94	0	4563137..4564456	-	439	114564975	-	Sfri_3825	-	N-acetylglutamate synthase
3789	 34.48	-2	4564933..4565106	-	57	114564976	rpmG	Sfri_3826	-	50S ribosomal protein L33
3790	 40.93	0	4565113..4565349	-	78	114564977	-	Sfri_3827	-	ribosomal protein L28
3791	 43.22	0	4565471..4566148	-	225	114564978	-	Sfri_3828	-	DNA repair protein RadC
3792	 46.30	+1	4566645..4567847	+	400	114564979	-	Sfri_3829	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
3793	 45.10	0	4567844..4568302	+	152	114564980	dut	Sfri_3830	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3794	 42.42	0	4568338..4568931	+	197	114564981	slmA	Sfri_3831	-	nucleoid occlusion protein
3795	 38.99	0	4569073..4571052	+	659	114564982	-	Sfri_3832	-	peptidase S9 prolyl oligopeptidase
3796	 41.18	0	4571310..4573259	+	649	114564983	-	Sfri_3833	-	peptidase S9 prolyl oligopeptidase
3797	 44.09	0	4573438..4574088	+	216	114564984	folE	Sfri_3834	-	GTP cyclohydrolase I
3798	 44.39	0	4574174..4574815	-	213	114564985	pyrE	Sfri_3835	-	orotate phosphoribosyltransferase
3799	 44.12	0	4574888..4575601	-	237	114564986	-	Sfri_3836	-	ribonuclease PH
3800	 47.22	+1	4575779..4576642	+	287	114564987	-	Sfri_3837	-	hypothetical protein
3801	 44.06	0	4577027..4578313	+	428	114564988	-	Sfri_3838	-	hypothetical protein
3802	 48.68	+2	4578345..4580357	+	670	114564989	-	Sfri_3839	-	peptidase S15
3803	 43.51	0	4580743..4581951	+	402	114564990	-	Sfri_3840	-	hypothetical protein
3804	 44.42	0	4582173..4583489	+	438	114564991	-	Sfri_3841	-	anaerobic C4-dicarboxylate transporter
3805	 39.58	0	4584098..4587283	-	1061	114564992	-	Sfri_3842	-	type III restriction enzyme, res subunit
3806	 44.72	0	4587369..4588475	-	368	114564993	-	Sfri_3843	-	filamentation induced by cAMP protein Fic
3807	 42.40	0	4588709..4589491	+	260	114564994	-	Sfri_3844	-	hypothetical protein
3808	 45.98	+1	4589571..4591001	-	476	114564995	-	Sfri_3845	-	twin-arginine translocation pathway signal
3809	 32.58	-2	4591050..4591316	-	88	114564996	-	Sfri_3846	-	hypothetical protein
3810	 47.79	+1	4591486..4593678	-	730	114564997	-	Sfri_3847	-	glucosyltransferase MdoH
3811	 45.60	+1	4593681..4595360	-	559	114564998	mdoG	Sfri_3848	-	glucan biosynthesis protein G
3812	 42.18	0	4595914..4596885	+	323	114564999	-	Sfri_3849	-	alpha/beta hydrolase fold
3813	 40.44	0	4596891..4597889	+	332	114565000	-	Sfri_3850	-	lipase chaperone-like protein
3814	 43.82	0	4598671..4600806	+	711	114565001	-	Sfri_3851	-	TonB-dependent siderophore receptor
3815	 42.31	0	4601031..4602434	-	467	114565002	-	Sfri_3852	-	methyl-accepting chemotaxis sensory transducer
3816	 40.94	0	4602762..4603550	-	262	114565003	-	Sfri_3853	-	transcriptional regulator, AraC family protein
3817	 44.91	0	4603654..4604862	+	402	114565004	-	Sfri_3854	-	major facilitator transporter
3818	 44.08	0	4605045..4605593	-	182	114565005	-	Sfri_3855	-	HPP family protein
3819	 39.71	0	4605757..4606665	-	302	114565006	-	Sfri_3856	-	hypothetical protein
3820	 47.46	+1	4606677..4607504	-	275	114565007	-	Sfri_3857	-	hypothetical protein
3821	 43.59	0	4607572..4608429	+	285	114565008	-	Sfri_3858	-	hypothetical protein
3822	 46.42	+1	4608785..4610221	-	478	114565009	-	Sfri_3859	-	peptidase M28
3823	 44.24	0	4610238..4611227	-	329	114565010	-	Sfri_3860	-	lytic transglycosylase, catalytic
3824	 44.44	0	4611232..4611771	-	179	114565011	-	Sfri_3861	-	hypothetical protein
3825	 44.87	0	4612190..4615345	-	1051	114565012	-	Sfri_3862	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
3826	 44.39	0	4615355..4616503	-	382	114565013	-	Sfri_3863	-	RND family efflux transporter MFP subunit
3827	 42.43	0	4616831..4617940	-	369	114565014	-	Sfri_3864	-	outer membrane protein RomA
3828	 41.59	0	4618037..4618654	+	205	114565015	-	Sfri_3865	-	transcriptional regulator, TetR family protein
3829	 43.96	0	4618672..4619358	-	228	114565016	-	Sfri_3866	-	3-methyladenine DNA glycosylase
3830	 36.72	-1	4619456..4619986	-	176	114565017	-	Sfri_3867	-	hypothetical protein
3831	 47.34	+1	4620527..4621183	+	218	114565018	ribB	Sfri_3868	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
3832	 41.44	0	4621838..4622701	-	287	114565019	-	Sfri_3869	-	hypothetical protein
3833	 43.81	0	4622717..4622926	-	69	114565020	-	Sfri_3870	-	transcriptional regulator, XRE family protein
3834	 39.18	0	4622926..4623507	-	193	114565021	-	Sfri_3871	-	hypothetical protein
3835	 39.22	0	4623840..4624196	+	118	114565022	-	Sfri_3872	-	transcriptional regulator, MerR family protein
3836	 43.12	0	4624255..4624632	+	125	114565023	-	Sfri_3873	-	carboxymuconolactone decarboxylase
3837	 44.22	0	4624770..4626809	-	679	114565024	-	Sfri_3874	-	oligopeptidase A
3838	 43.33	0	4627162..4627941	+	259	114565025	-	Sfri_3875	-	hypothetical protein
3839	 44.07	0	4628020..4628550	+	176	114565026	-	Sfri_3876	-	hypothetical protein
3840	 46.61	+1	4628628..4629983	+	451	114565027	-	Sfri_3877	-	glutathione reductase
3841	 40.39	0	4630202..4631236	-	344	114565028	-	Sfri_3878	-	integrase catalytic subunit
3842	 41.70	0	4631273..4632874	-	533	114565029	-	Sfri_3879	-	sodium/sulphate symporter
3843	 39.94	0	4633200..4633835	+	211	114565030	-	Sfri_3880	-	hypothetical protein
3844	 41.40	0	4633893..4634363	+	156	114565031	-	Sfri_3881	-	adenylate cyclase
3845	 40.68	0	4635124..4636470	+	448	114565032	-	Sfri_3882	-	phosphate-selective porin O and P
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.